Hb_001564_130

Information

Type -
Description -
Location Contig1564: 140640-147690
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_479363
description single-strand-binding family protein
nr
ID XP_012092942.1
description PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
swissprot
ID Q84J78
description Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana GN=At4g11060 PE=2 SV=1
trembl
ID A0A067J8I3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05840 PE=4 SV=1
Gene Ontology
ID GO:0005739
description single-stranded dna-binding mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13599: 140785-147676 , PASA_asmbl_13600: 140813-147617 , PASA_asmbl_13601: 142044-142197
cDNA
(Sanger)
(ID:Location)		 006_O14.ab1: 140785-141504 , 048_B16.ab1: 140785-141559

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001564_130 0.0 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
2 Hb_003292_040 0.0482783205 transcription factor TF Family: MBF1 uncharacterized protein LOC100500420 [Glycine max]
3 Hb_000670_020 0.0699277721 - - PREDICTED: chromatin modification-related protein EAF3-like [Jatropha curcas]
4 Hb_001512_060 0.0736165502 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Jatropha curcas]
5 Hb_011970_030 0.0747760094 - - PREDICTED: uncharacterized protein LOC105641805 [Jatropha curcas]
6 Hb_010368_020 0.0756583971 - - PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]
7 Hb_001348_070 0.0766432044 - - Uncharacterized protein isoform 1 [Theobroma cacao]
8 Hb_001329_290 0.0770993642 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
9 Hb_002233_150 0.078306716 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
10 Hb_001489_060 0.0785929229 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
11 Hb_005618_160 0.0792419771 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
12 Hb_010921_010 0.0808531887 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]
13 Hb_007154_020 0.0814002783 - - -
14 Hb_002346_020 0.0839002833 - - -
15 Hb_001534_120 0.0844200753 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
16 Hb_000302_010 0.084914812 - - Vesicle-associated membrane protein, putative [Ricinus communis]
17 Hb_005016_090 0.0863610466 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
18 Hb_001234_080 0.0872804461 - - PREDICTED: eyes absent homolog 2-like isoform X2 [Musa acuminata subsp. malaccensis]
19 Hb_004449_170 0.0877701672 - - PREDICTED: uncharacterized protein LOC105631285 isoform X1 [Jatropha curcas]
20 Hb_003683_050 0.0881767403 - - PREDICTED: uncharacterized protein LOC105650619 [Jatropha curcas]

Gene co-expression network

sample Hb_001564_130 Hb_001564_130 Hb_003292_040 Hb_003292_040 Hb_001564_130--Hb_003292_040 Hb_000670_020 Hb_000670_020 Hb_001564_130--Hb_000670_020 Hb_001512_060 Hb_001512_060 Hb_001564_130--Hb_001512_060 Hb_011970_030 Hb_011970_030 Hb_001564_130--Hb_011970_030 Hb_010368_020 Hb_010368_020 Hb_001564_130--Hb_010368_020 Hb_001348_070 Hb_001348_070 Hb_001564_130--Hb_001348_070 Hb_003292_040--Hb_011970_030 Hb_003292_040--Hb_000670_020 Hb_000610_010 Hb_000610_010 Hb_003292_040--Hb_000610_010 Hb_003687_230 Hb_003687_230 Hb_003292_040--Hb_003687_230 Hb_002233_150 Hb_002233_150 Hb_003292_040--Hb_002233_150 Hb_003683_050 Hb_003683_050 Hb_000670_020--Hb_003683_050 Hb_000670_020--Hb_001348_070 Hb_000670_020--Hb_011970_030 Hb_000670_020--Hb_010368_020 Hb_010921_010 Hb_010921_010 Hb_001512_060--Hb_010921_010 Hb_000362_200 Hb_000362_200 Hb_001512_060--Hb_000362_200 Hb_001534_120 Hb_001534_120 Hb_001512_060--Hb_001534_120 Hb_007477_070 Hb_007477_070 Hb_001512_060--Hb_007477_070 Hb_007154_020 Hb_007154_020 Hb_001512_060--Hb_007154_020 Hb_002346_020 Hb_002346_020 Hb_001512_060--Hb_002346_020 Hb_011970_030--Hb_002233_150 Hb_005618_160 Hb_005618_160 Hb_011970_030--Hb_005618_160 Hb_000640_240 Hb_000640_240 Hb_011970_030--Hb_000640_240 Hb_001454_400 Hb_001454_400 Hb_011970_030--Hb_001454_400 Hb_005016_090 Hb_005016_090 Hb_010368_020--Hb_005016_090 Hb_000771_080 Hb_000771_080 Hb_010368_020--Hb_000771_080 Hb_010368_020--Hb_001348_070 Hb_001195_760 Hb_001195_760 Hb_010368_020--Hb_001195_760 Hb_002687_140 Hb_002687_140 Hb_001348_070--Hb_002687_140 Hb_001348_070--Hb_007154_020 Hb_003752_080 Hb_003752_080 Hb_001348_070--Hb_003752_080 Hb_001348_070--Hb_002233_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.1827 8.41093 13.3243 8.19225 23.0578 13.9989
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.6994 25.8539 9.47466 7.61156 5.73128

CAGE analysis