Hb_000771_080

Information

Type -
Description -
Location Contig771: 42638-43315
Sequence    

Annotation

kegg
ID rcu:RCOM_1579800
description Cyclic nucleotide-gated ion channel, putative
nr
ID XP_012090092.1
description PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
swissprot
ID O65717
description Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1
trembl
ID A0A067JQ89
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25986 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cyclic nucleotide-gated ion channel 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57651: 43856-43964
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000771_080 0.0 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
2 Hb_010368_020 0.0806896991 - - PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]
3 Hb_097783_020 0.0831149353 - - PREDICTED: small G protein signaling modulator 1 [Jatropha curcas]
4 Hb_001586_040 0.0882448775 - - hypothetical protein JCGZ_17187 [Jatropha curcas]
5 Hb_001564_130 0.0980062964 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_005618_160 0.1038903132 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
7 Hb_000144_100 0.1057926586 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
8 Hb_003292_040 0.1062039528 transcription factor TF Family: MBF1 uncharacterized protein LOC100500420 [Glycine max]
9 Hb_001348_070 0.1107640436 - - Uncharacterized protein isoform 1 [Theobroma cacao]
10 Hb_030565_080 0.1109621254 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
11 Hb_003752_080 0.1114925569 - - PREDICTED: ubiquitin-like-conjugating enzyme ATG10 isoform X1 [Jatropha curcas]
12 Hb_000462_140 0.1127704069 - - PREDICTED: dnaJ homolog subfamily C member 28 [Jatropha curcas]
13 Hb_003849_250 0.1148674041 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
14 Hb_000670_020 0.1152486078 - - PREDICTED: chromatin modification-related protein EAF3-like [Jatropha curcas]
15 Hb_000174_110 0.1156895429 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
16 Hb_021576_040 0.1174794176 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002687_140 0.1179308118 - - hypothetical protein JCGZ_24463 [Jatropha curcas]
18 Hb_070739_010 0.1200418494 - - PREDICTED: probable aminotransferase ACS12 isoform X2 [Jatropha curcas]
19 Hb_005016_090 0.1205183676 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
20 Hb_002296_050 0.1216243145 - - hypothetical protein AMTR_s00001p00247600 [Amborella trichopoda]

Gene co-expression network

sample Hb_000771_080 Hb_000771_080 Hb_010368_020 Hb_010368_020 Hb_000771_080--Hb_010368_020 Hb_097783_020 Hb_097783_020 Hb_000771_080--Hb_097783_020 Hb_001586_040 Hb_001586_040 Hb_000771_080--Hb_001586_040 Hb_001564_130 Hb_001564_130 Hb_000771_080--Hb_001564_130 Hb_005618_160 Hb_005618_160 Hb_000771_080--Hb_005618_160 Hb_000144_100 Hb_000144_100 Hb_000771_080--Hb_000144_100 Hb_005016_090 Hb_005016_090 Hb_010368_020--Hb_005016_090 Hb_010368_020--Hb_001564_130 Hb_000670_020 Hb_000670_020 Hb_010368_020--Hb_000670_020 Hb_001348_070 Hb_001348_070 Hb_010368_020--Hb_001348_070 Hb_001195_760 Hb_001195_760 Hb_010368_020--Hb_001195_760 Hb_011224_060 Hb_011224_060 Hb_097783_020--Hb_011224_060 Hb_097783_020--Hb_005618_160 Hb_003292_040 Hb_003292_040 Hb_097783_020--Hb_003292_040 Hb_011970_030 Hb_011970_030 Hb_097783_020--Hb_011970_030 Hb_000313_300 Hb_000313_300 Hb_097783_020--Hb_000313_300 Hb_000649_070 Hb_000649_070 Hb_001586_040--Hb_000649_070 Hb_000174_110 Hb_000174_110 Hb_001586_040--Hb_000174_110 Hb_001586_040--Hb_005618_160 Hb_002739_050 Hb_002739_050 Hb_001586_040--Hb_002739_050 Hb_001329_130 Hb_001329_130 Hb_001586_040--Hb_001329_130 Hb_010068_040 Hb_010068_040 Hb_001586_040--Hb_010068_040 Hb_001564_130--Hb_003292_040 Hb_001564_130--Hb_000670_020 Hb_001512_060 Hb_001512_060 Hb_001564_130--Hb_001512_060 Hb_001564_130--Hb_011970_030 Hb_001564_130--Hb_001348_070 Hb_005618_160--Hb_000174_110 Hb_054865_100 Hb_054865_100 Hb_005618_160--Hb_054865_100 Hb_005618_160--Hb_011970_030 Hb_000462_140 Hb_000462_140 Hb_005618_160--Hb_000462_140 Hb_003010_030 Hb_003010_030 Hb_005618_160--Hb_003010_030 Hb_002495_040 Hb_002495_040 Hb_005618_160--Hb_002495_040 Hb_000220_040 Hb_000220_040 Hb_000144_100--Hb_000220_040 Hb_000009_530 Hb_000009_530 Hb_000144_100--Hb_000009_530 Hb_000610_010 Hb_000610_010 Hb_000144_100--Hb_000610_010 Hb_000275_170 Hb_000275_170 Hb_000144_100--Hb_000275_170 Hb_002296_050 Hb_002296_050 Hb_000144_100--Hb_002296_050 Hb_000144_100--Hb_003292_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.91972 7.28077 6.95172 4.43621 17.1141 8.56069
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3608 13.7172 2.54948 3.76479 3.44721

CAGE analysis