Hb_011224_060

Information

Type -
Description -
Location Contig11224: 32176-32877
Sequence    

Annotation

kegg
ID pop:POPTR_0011s16880g
description hypothetical protein
nr
ID XP_006377977.1
description hypothetical protein POPTR_0011s16880g [Populus trichocarpa]
swissprot
ID Q9VR89
description RNA-binding protein pno1 OS=Drosophila melanogaster GN=l(1)G0004 PE=2 SV=1
trembl
ID U5G067
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s16880g PE=4 SV=1
Gene Ontology
ID GO:0003723
description rna-binding protein pno1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011224_060 0.0 - - hypothetical protein POPTR_0011s16880g [Populus trichocarpa]
2 Hb_004032_430 0.071536337 - - PREDICTED: uncharacterized protein LOC105635169 [Jatropha curcas]
3 Hb_003050_200 0.0732826233 - - Ribosomal protein L18ae/LX family protein [Theobroma cacao]
4 Hb_003292_040 0.0805899989 transcription factor TF Family: MBF1 uncharacterized protein LOC100500420 [Glycine max]
5 Hb_011970_030 0.080608283 - - PREDICTED: uncharacterized protein LOC105641805 [Jatropha curcas]
6 Hb_097783_020 0.0815239975 - - PREDICTED: small G protein signaling modulator 1 [Jatropha curcas]
7 Hb_003935_020 0.0871025656 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_105386_010 0.088765932 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
9 Hb_004116_060 0.088949039 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
10 Hb_021419_020 0.0895226019 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
11 Hb_000959_210 0.0922788592 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 [Jatropha curcas]
12 Hb_005618_160 0.0938035865 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
13 Hb_000189_340 0.0945241216 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
14 Hb_004127_010 0.0947383823 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein [Malus domestica]
15 Hb_002296_050 0.0948202318 - - hypothetical protein AMTR_s00001p00247600 [Amborella trichopoda]
16 Hb_001564_130 0.0948977319 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_001329_290 0.0950300452 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
18 Hb_120410_010 0.0972751902 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
19 Hb_002918_210 0.1000751681 - - PREDICTED: uncharacterized protein LOC105138897 isoform X2 [Populus euphratica]
20 Hb_010068_040 0.100615783 - - PREDICTED: uncharacterized protein LOC105632964 [Jatropha curcas]

Gene co-expression network

sample Hb_011224_060 Hb_011224_060 Hb_004032_430 Hb_004032_430 Hb_011224_060--Hb_004032_430 Hb_003050_200 Hb_003050_200 Hb_011224_060--Hb_003050_200 Hb_003292_040 Hb_003292_040 Hb_011224_060--Hb_003292_040 Hb_011970_030 Hb_011970_030 Hb_011224_060--Hb_011970_030 Hb_097783_020 Hb_097783_020 Hb_011224_060--Hb_097783_020 Hb_003935_020 Hb_003935_020 Hb_011224_060--Hb_003935_020 Hb_004310_150 Hb_004310_150 Hb_004032_430--Hb_004310_150 Hb_000275_170 Hb_000275_170 Hb_004032_430--Hb_000275_170 Hb_000959_210 Hb_000959_210 Hb_004032_430--Hb_000959_210 Hb_010068_040 Hb_010068_040 Hb_004032_430--Hb_010068_040 Hb_004032_430--Hb_003935_020 Hb_002918_210 Hb_002918_210 Hb_003050_200--Hb_002918_210 Hb_000808_250 Hb_000808_250 Hb_003050_200--Hb_000808_250 Hb_105386_010 Hb_105386_010 Hb_003050_200--Hb_105386_010 Hb_003050_200--Hb_011970_030 Hb_004363_010 Hb_004363_010 Hb_003050_200--Hb_004363_010 Hb_001564_130 Hb_001564_130 Hb_003292_040--Hb_001564_130 Hb_003292_040--Hb_011970_030 Hb_000670_020 Hb_000670_020 Hb_003292_040--Hb_000670_020 Hb_000610_010 Hb_000610_010 Hb_003292_040--Hb_000610_010 Hb_003687_230 Hb_003687_230 Hb_003292_040--Hb_003687_230 Hb_002233_150 Hb_002233_150 Hb_003292_040--Hb_002233_150 Hb_011970_030--Hb_002233_150 Hb_005618_160 Hb_005618_160 Hb_011970_030--Hb_005618_160 Hb_000640_240 Hb_000640_240 Hb_011970_030--Hb_000640_240 Hb_001454_400 Hb_001454_400 Hb_011970_030--Hb_001454_400 Hb_011970_030--Hb_001564_130 Hb_000771_080 Hb_000771_080 Hb_097783_020--Hb_000771_080 Hb_097783_020--Hb_005618_160 Hb_097783_020--Hb_003292_040 Hb_097783_020--Hb_011970_030 Hb_000313_300 Hb_000313_300 Hb_097783_020--Hb_000313_300 Hb_003935_020--Hb_000959_210 Hb_014109_040 Hb_014109_040 Hb_003935_020--Hb_014109_040 Hb_004093_090 Hb_004093_090 Hb_003935_020--Hb_004093_090 Hb_120410_010 Hb_120410_010 Hb_003935_020--Hb_120410_010 Hb_002652_030 Hb_002652_030 Hb_003935_020--Hb_002652_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.9951 22.3533 32.6383 25.4161 47.84 45.8436
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.9336 61.3238 15.3784 18.9687 13.4112

CAGE analysis