Hb_002918_210

Information

Type -
Description -
Location Contig2918: 198292-200155
Sequence    

Annotation

kegg
ID pop:POPTR_0011s05620g
description hypothetical protein
nr
ID XP_011043431.1
description PREDICTED: uncharacterized protein LOC105138897 isoform X2 [Populus euphratica]
swissprot
ID Q93ZJ3
description Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NFD6 PE=2 SV=1
trembl
ID U5G142
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s05620g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30617: 197427-200102 , PASA_asmbl_30618: 198401-198615
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002918_210 0.0 - - PREDICTED: uncharacterized protein LOC105138897 isoform X2 [Populus euphratica]
2 Hb_003050_200 0.0649342595 - - Ribosomal protein L18ae/LX family protein [Theobroma cacao]
3 Hb_000808_250 0.0800118471 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]
4 Hb_003292_040 0.0870974843 transcription factor TF Family: MBF1 uncharacterized protein LOC100500420 [Glycine max]
5 Hb_001348_070 0.0936673451 - - Uncharacterized protein isoform 1 [Theobroma cacao]
6 Hb_001564_130 0.0950363567 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
7 Hb_000663_040 0.0964328811 - - PREDICTED: uncharacterized protein LOC105650729 isoform X1 [Jatropha curcas]
8 Hb_000009_530 0.0972917168 - - PREDICTED: uncharacterized protein LOC105639628 [Jatropha curcas]
9 Hb_004363_010 0.0974011111 - - hypothetical protein CISIN_1g0405721mg, partial [Citrus sinensis]
10 Hb_000275_170 0.0979197739 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
11 Hb_002192_080 0.0987253709 - - hypothetical protein B456_013G069200 [Gossypium raimondii]
12 Hb_004093_090 0.0988716409 - - PREDICTED: uncharacterized protein LOC105633550 [Jatropha curcas]
13 Hb_011609_100 0.0999715306 - - PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Jatropha curcas]
14 Hb_011224_060 0.1000751681 - - hypothetical protein POPTR_0011s16880g [Populus trichocarpa]
15 Hb_011970_030 0.1021340444 - - PREDICTED: uncharacterized protein LOC105641805 [Jatropha curcas]
16 Hb_007007_050 0.104687884 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Malus domestica]
17 Hb_000610_010 0.1047391626 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
18 Hb_002292_010 0.1048435446 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]
19 Hb_010368_020 0.1052243146 - - PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]
20 Hb_002233_150 0.1056695421 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]

Gene co-expression network

sample Hb_002918_210 Hb_002918_210 Hb_003050_200 Hb_003050_200 Hb_002918_210--Hb_003050_200 Hb_000808_250 Hb_000808_250 Hb_002918_210--Hb_000808_250 Hb_003292_040 Hb_003292_040 Hb_002918_210--Hb_003292_040 Hb_001348_070 Hb_001348_070 Hb_002918_210--Hb_001348_070 Hb_001564_130 Hb_001564_130 Hb_002918_210--Hb_001564_130 Hb_000663_040 Hb_000663_040 Hb_002918_210--Hb_000663_040 Hb_011224_060 Hb_011224_060 Hb_003050_200--Hb_011224_060 Hb_003050_200--Hb_000808_250 Hb_105386_010 Hb_105386_010 Hb_003050_200--Hb_105386_010 Hb_011970_030 Hb_011970_030 Hb_003050_200--Hb_011970_030 Hb_004363_010 Hb_004363_010 Hb_003050_200--Hb_004363_010 Hb_006623_020 Hb_006623_020 Hb_000808_250--Hb_006623_020 Hb_003849_060 Hb_003849_060 Hb_000808_250--Hb_003849_060 Hb_021422_010 Hb_021422_010 Hb_000808_250--Hb_021422_010 Hb_000359_330 Hb_000359_330 Hb_000808_250--Hb_000359_330 Hb_178968_100 Hb_178968_100 Hb_000808_250--Hb_178968_100 Hb_106552_050 Hb_106552_050 Hb_000808_250--Hb_106552_050 Hb_003292_040--Hb_001564_130 Hb_003292_040--Hb_011970_030 Hb_000670_020 Hb_000670_020 Hb_003292_040--Hb_000670_020 Hb_000610_010 Hb_000610_010 Hb_003292_040--Hb_000610_010 Hb_003687_230 Hb_003687_230 Hb_003292_040--Hb_003687_230 Hb_002233_150 Hb_002233_150 Hb_003292_040--Hb_002233_150 Hb_002687_140 Hb_002687_140 Hb_001348_070--Hb_002687_140 Hb_007154_020 Hb_007154_020 Hb_001348_070--Hb_007154_020 Hb_003752_080 Hb_003752_080 Hb_001348_070--Hb_003752_080 Hb_001348_070--Hb_001564_130 Hb_001348_070--Hb_000670_020 Hb_001348_070--Hb_002233_150 Hb_001564_130--Hb_000670_020 Hb_001512_060 Hb_001512_060 Hb_001564_130--Hb_001512_060 Hb_001564_130--Hb_011970_030 Hb_010368_020 Hb_010368_020 Hb_001564_130--Hb_010368_020 Hb_000244_300 Hb_000244_300 Hb_000663_040--Hb_000244_300 Hb_000421_070 Hb_000421_070 Hb_000663_040--Hb_000421_070 Hb_001117_100 Hb_001117_100 Hb_000663_040--Hb_001117_100 Hb_005332_070 Hb_005332_070 Hb_000663_040--Hb_005332_070 Hb_000465_470 Hb_000465_470 Hb_000663_040--Hb_000465_470 Hb_011609_100 Hb_011609_100 Hb_000663_040--Hb_011609_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.58541 3.91822 5.65213 2.78871 9.17358 5.66687
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.55468 9.47181 4.13706 2.55289 1.44722

CAGE analysis