Hb_000244_300

Information

Type -
Description -
Location Contig244: 309157-312278
Sequence    

Annotation

kegg
ID pop:POPTR_0007s04040g
description POPTRDRAFT_832235; ribosomal protein L17
nr
ID XP_012086086.1
description PREDICTED: probable 39S ribosomal protein L17, mitochondrial [Jatropha curcas]
swissprot
ID Q749B4
description 50S ribosomal protein L17 OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=rplQ PE=3 SV=1
trembl
ID A0A067JQG8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22243 PE=3 SV=1
Gene Ontology
ID GO:0005840
description ribosomal protein l17 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25485: 309942-310338 , PASA_asmbl_25486: 309287-312191
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000244_300 0.0 - - PREDICTED: probable 39S ribosomal protein L17, mitochondrial [Jatropha curcas]
2 Hb_000394_190 0.0633907211 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
3 Hb_000663_040 0.0649738401 - - PREDICTED: uncharacterized protein LOC105650729 isoform X1 [Jatropha curcas]
4 Hb_000359_330 0.086140543 - - conserved hypothetical protein [Ricinus communis]
5 Hb_011848_010 0.0871834422 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
6 Hb_000140_080 0.0881168245 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
7 Hb_003849_060 0.0893725066 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
8 Hb_012799_110 0.0923877137 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
9 Hb_054865_090 0.0941406645 - - GRF1-INTERACTING FACTOR 2 family protein [Populus trichocarpa]
10 Hb_000261_250 0.0945481661 - - elongation factor 1-alpha [Lepidium sativum]
11 Hb_000421_070 0.0961191886 - - WD-repeat protein, putative [Ricinus communis]
12 Hb_033095_020 0.0974226831 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002192_080 0.097645298 - - hypothetical protein B456_013G069200 [Gossypium raimondii]
14 Hb_001720_010 0.0984232371 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
15 Hb_007164_020 0.0993728798 - - hypothetical protein glysoja_025872 [Glycine soja]
16 Hb_001014_050 0.0995255289 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105647306 [Jatropha curcas]
17 Hb_011386_040 0.0995454229 - - PREDICTED: uncharacterized protein LOC105639243 isoform X2 [Jatropha curcas]
18 Hb_001898_230 0.1009771488 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X2 [Jatropha curcas]
19 Hb_000224_060 0.1042726557 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
20 Hb_000803_110 0.1045619919 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]

Gene co-expression network

sample Hb_000244_300 Hb_000244_300 Hb_000394_190 Hb_000394_190 Hb_000244_300--Hb_000394_190 Hb_000663_040 Hb_000663_040 Hb_000244_300--Hb_000663_040 Hb_000359_330 Hb_000359_330 Hb_000244_300--Hb_000359_330 Hb_011848_010 Hb_011848_010 Hb_000244_300--Hb_011848_010 Hb_000140_080 Hb_000140_080 Hb_000244_300--Hb_000140_080 Hb_003849_060 Hb_003849_060 Hb_000244_300--Hb_003849_060 Hb_000261_250 Hb_000261_250 Hb_000394_190--Hb_000261_250 Hb_000787_170 Hb_000787_170 Hb_000394_190--Hb_000787_170 Hb_003467_010 Hb_003467_010 Hb_000394_190--Hb_003467_010 Hb_012799_110 Hb_012799_110 Hb_000394_190--Hb_012799_110 Hb_033095_020 Hb_033095_020 Hb_000394_190--Hb_033095_020 Hb_000421_070 Hb_000421_070 Hb_000663_040--Hb_000421_070 Hb_001117_100 Hb_001117_100 Hb_000663_040--Hb_001117_100 Hb_005332_070 Hb_005332_070 Hb_000663_040--Hb_005332_070 Hb_000465_470 Hb_000465_470 Hb_000663_040--Hb_000465_470 Hb_011609_100 Hb_011609_100 Hb_000663_040--Hb_011609_100 Hb_000359_330--Hb_011848_010 Hb_003091_010 Hb_003091_010 Hb_000359_330--Hb_003091_010 Hb_000808_250 Hb_000808_250 Hb_000359_330--Hb_000808_250 Hb_000359_330--Hb_000394_190 Hb_006623_020 Hb_006623_020 Hb_000359_330--Hb_006623_020 Hb_004450_060 Hb_004450_060 Hb_000359_330--Hb_004450_060 Hb_011848_010--Hb_003091_010 Hb_000617_220 Hb_000617_220 Hb_011848_010--Hb_000617_220 Hb_000803_110 Hb_000803_110 Hb_011848_010--Hb_000803_110 Hb_011848_010--Hb_004450_060 Hb_009222_010 Hb_009222_010 Hb_011848_010--Hb_009222_010 Hb_000224_060 Hb_000224_060 Hb_000140_080--Hb_000224_060 Hb_000140_080--Hb_033095_020 Hb_011386_040 Hb_011386_040 Hb_000140_080--Hb_011386_040 Hb_000261_220 Hb_000261_220 Hb_000140_080--Hb_000261_220 Hb_031527_020 Hb_031527_020 Hb_000140_080--Hb_031527_020 Hb_000152_340 Hb_000152_340 Hb_000140_080--Hb_000152_340 Hb_003849_060--Hb_000808_250 Hb_000334_270 Hb_000334_270 Hb_003849_060--Hb_000334_270 Hb_003849_060--Hb_003467_010 Hb_003849_060--Hb_011848_010 Hb_003849_060--Hb_000394_190 Hb_002192_080 Hb_002192_080 Hb_003849_060--Hb_002192_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
80.7231 60.4498 39.6468 15.1495 74.2043 80.3401
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.5826 78.1526 28.5409 29.3241 11.4817

CAGE analysis