Hb_033095_020

Information

Type -
Description -
Location Contig33095: 5590-9971
Sequence    

Annotation

kegg
ID rcu:RCOM_0369220
description hypothetical protein
nr
ID XP_002532512.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T2P3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0369220 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34743: 5679-6932 , PASA_asmbl_34745: 7752-8128 , PASA_asmbl_34747: 9676-9900
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033095_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000140_080 0.0679871426 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
3 Hb_000394_190 0.0731516194 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
4 Hb_001168_040 0.0766102223 - - -
5 Hb_008511_030 0.0784221175 - - guanine nucleotide-binding protein beta, putative [Ricinus communis]
6 Hb_002025_110 0.0802575851 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: SWI/SNF complex component SNF12 homolog isoform X1 [Jatropha curcas]
7 Hb_012799_110 0.0813951003 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
8 Hb_000406_240 0.0854687155 - - PREDICTED: double-stranded RNA-binding protein 2-like [Jatropha curcas]
9 Hb_011386_040 0.0854923885 - - PREDICTED: uncharacterized protein LOC105639243 isoform X2 [Jatropha curcas]
10 Hb_005489_080 0.0866874994 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000261_220 0.0868632663 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
12 Hb_031527_020 0.0902556316 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
13 Hb_011942_080 0.0906651949 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
14 Hb_000224_060 0.0912853417 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
15 Hb_001357_380 0.0920041889 - - PREDICTED: probable tetraacyldisaccharide 4'-kinase, mitochondrial isoform X1 [Jatropha curcas]
16 Hb_000334_270 0.0920129537 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
17 Hb_004970_090 0.0935417558 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
18 Hb_003849_060 0.0939027435 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
19 Hb_003467_010 0.0941036053 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]
20 Hb_000421_120 0.0950834259 - - PREDICTED: NEDD8-specific protease 1 [Jatropha curcas]

Gene co-expression network

sample Hb_033095_020 Hb_033095_020 Hb_000140_080 Hb_000140_080 Hb_033095_020--Hb_000140_080 Hb_000394_190 Hb_000394_190 Hb_033095_020--Hb_000394_190 Hb_001168_040 Hb_001168_040 Hb_033095_020--Hb_001168_040 Hb_008511_030 Hb_008511_030 Hb_033095_020--Hb_008511_030 Hb_002025_110 Hb_002025_110 Hb_033095_020--Hb_002025_110 Hb_012799_110 Hb_012799_110 Hb_033095_020--Hb_012799_110 Hb_000224_060 Hb_000224_060 Hb_000140_080--Hb_000224_060 Hb_011386_040 Hb_011386_040 Hb_000140_080--Hb_011386_040 Hb_000261_220 Hb_000261_220 Hb_000140_080--Hb_000261_220 Hb_031527_020 Hb_031527_020 Hb_000140_080--Hb_031527_020 Hb_000152_340 Hb_000152_340 Hb_000140_080--Hb_000152_340 Hb_000261_250 Hb_000261_250 Hb_000394_190--Hb_000261_250 Hb_000244_300 Hb_000244_300 Hb_000394_190--Hb_000244_300 Hb_000787_170 Hb_000787_170 Hb_000394_190--Hb_000787_170 Hb_003467_010 Hb_003467_010 Hb_000394_190--Hb_003467_010 Hb_000394_190--Hb_012799_110 Hb_001623_140 Hb_001623_140 Hb_001168_040--Hb_001623_140 Hb_001288_080 Hb_001288_080 Hb_001168_040--Hb_001288_080 Hb_000421_120 Hb_000421_120 Hb_001168_040--Hb_000421_120 Hb_000406_240 Hb_000406_240 Hb_001168_040--Hb_000406_240 Hb_001168_040--Hb_000394_190 Hb_008511_030--Hb_031527_020 Hb_005489_080 Hb_005489_080 Hb_008511_030--Hb_005489_080 Hb_000457_050 Hb_000457_050 Hb_008511_030--Hb_000457_050 Hb_008511_030--Hb_000140_080 Hb_000959_270 Hb_000959_270 Hb_008511_030--Hb_000959_270 Hb_002025_110--Hb_000261_220 Hb_002025_110--Hb_005489_080 Hb_111198_010 Hb_111198_010 Hb_002025_110--Hb_111198_010 Hb_002025_110--Hb_000140_080 Hb_002025_110--Hb_031527_020 Hb_011942_080 Hb_011942_080 Hb_012799_110--Hb_011942_080 Hb_003849_060 Hb_003849_060 Hb_012799_110--Hb_003849_060 Hb_011848_010 Hb_011848_010 Hb_012799_110--Hb_011848_010 Hb_012799_110--Hb_003467_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.8712 7.36967 3.84406 2.85257 7.76583 7.40328
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.17977 5.66889 2.35147 2.38843 1.76816

CAGE analysis