Hb_001168_040

Information

Type -
Description -
Location Contig1168: 29125-31798
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05215: 29188-30931 , PASA_asmbl_05216: 30251-30654 , PASA_asmbl_05218: 32352-32598
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001168_040 0.0 - - -
2 Hb_001623_140 0.0545156718 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 1 [Jatropha curcas]
3 Hb_033095_020 0.0766102223 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001288_080 0.0883858449 - - PREDICTED: probable protein phosphatase 2C 50 [Populus euphratica]
5 Hb_000421_120 0.0885024294 - - PREDICTED: NEDD8-specific protease 1 [Jatropha curcas]
6 Hb_000406_240 0.0895788161 - - PREDICTED: double-stranded RNA-binding protein 2-like [Jatropha curcas]
7 Hb_000394_190 0.0899215615 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
8 Hb_001610_110 0.0955555897 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
9 Hb_000224_060 0.0958529653 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
10 Hb_001720_010 0.0961197904 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
11 Hb_001014_050 0.0997521667 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105647306 [Jatropha curcas]
12 Hb_012114_060 0.1000802233 - - PREDICTED: uncharacterized protein LOC105645814 [Jatropha curcas]
13 Hb_003467_010 0.1020995975 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]
14 Hb_011942_080 0.1039471238 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
15 Hb_001252_010 0.106187397 - - hypothetical protein JCGZ_01389 [Jatropha curcas]
16 Hb_000787_170 0.1063731978 - - hypothetical protein POPTR_0005s06400g [Populus trichocarpa]
17 Hb_007632_020 0.106548121 - - PREDICTED: dnaJ homolog subfamily C member 17 [Jatropha curcas]
18 Hb_086063_010 0.1067972898 - - soluble diacylglycerol acyltransferase [Ricinus communis]
19 Hb_032202_110 0.1072406869 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
20 Hb_011386_040 0.1078030093 - - PREDICTED: uncharacterized protein LOC105639243 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001168_040 Hb_001168_040 Hb_001623_140 Hb_001623_140 Hb_001168_040--Hb_001623_140 Hb_033095_020 Hb_033095_020 Hb_001168_040--Hb_033095_020 Hb_001288_080 Hb_001288_080 Hb_001168_040--Hb_001288_080 Hb_000421_120 Hb_000421_120 Hb_001168_040--Hb_000421_120 Hb_000406_240 Hb_000406_240 Hb_001168_040--Hb_000406_240 Hb_000394_190 Hb_000394_190 Hb_001168_040--Hb_000394_190 Hb_001610_110 Hb_001610_110 Hb_001623_140--Hb_001610_110 Hb_001623_140--Hb_001288_080 Hb_001720_010 Hb_001720_010 Hb_001623_140--Hb_001720_010 Hb_023827_040 Hb_023827_040 Hb_001623_140--Hb_023827_040 Hb_004324_340 Hb_004324_340 Hb_001623_140--Hb_004324_340 Hb_000140_080 Hb_000140_080 Hb_033095_020--Hb_000140_080 Hb_033095_020--Hb_000394_190 Hb_008511_030 Hb_008511_030 Hb_033095_020--Hb_008511_030 Hb_002025_110 Hb_002025_110 Hb_033095_020--Hb_002025_110 Hb_012799_110 Hb_012799_110 Hb_033095_020--Hb_012799_110 Hb_001288_080--Hb_001720_010 Hb_001288_080--Hb_001610_110 Hb_052764_050 Hb_052764_050 Hb_001288_080--Hb_052764_050 Hb_001288_080--Hb_004324_340 Hb_000224_060 Hb_000224_060 Hb_000421_120--Hb_000224_060 Hb_002813_010 Hb_002813_010 Hb_000421_120--Hb_002813_010 Hb_000046_010 Hb_000046_010 Hb_000421_120--Hb_000046_010 Hb_000865_080 Hb_000865_080 Hb_000421_120--Hb_000865_080 Hb_076693_020 Hb_076693_020 Hb_000421_120--Hb_076693_020 Hb_007982_070 Hb_007982_070 Hb_000406_240--Hb_007982_070 Hb_017075_030 Hb_017075_030 Hb_000406_240--Hb_017075_030 Hb_001486_080 Hb_001486_080 Hb_000406_240--Hb_001486_080 Hb_005883_010 Hb_005883_010 Hb_000406_240--Hb_005883_010 Hb_000140_330 Hb_000140_330 Hb_000406_240--Hb_000140_330 Hb_004635_050 Hb_004635_050 Hb_000406_240--Hb_004635_050 Hb_000261_250 Hb_000261_250 Hb_000394_190--Hb_000261_250 Hb_000244_300 Hb_000244_300 Hb_000394_190--Hb_000244_300 Hb_000787_170 Hb_000787_170 Hb_000394_190--Hb_000787_170 Hb_003467_010 Hb_003467_010 Hb_000394_190--Hb_003467_010 Hb_000394_190--Hb_012799_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.4218 28.2317 11.6114 8.34153 21.0944 27.9718
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.6948 22.224 8.92079 10.3976 7.90296

CAGE analysis