Hb_052764_050

Information

Type -
Description -
Location Contig52764: 31947-32576
Sequence    

Annotation

kegg
ID tcc:TCM_029974
description Vacuolar protein sorting-associated protein VPS28 family protein
nr
ID XP_012091511.1
description PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]
swissprot
ID Q9S9T7
description Vacuolar protein sorting-associated protein 28 homolog 2 OS=Arabidopsis thaliana GN=VPS28-2 PE=1 SV=2
trembl
ID A0A067JLK6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21366 PE=4 SV=1
Gene Ontology
ID GO:0000813
description vacuolar protein sorting-associated protein 28 homolog 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47120: 32643-33397
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_052764_050 0.0 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]
2 Hb_001610_110 0.0727034495 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
3 Hb_001288_080 0.081375756 - - PREDICTED: probable protein phosphatase 2C 50 [Populus euphratica]
4 Hb_012114_060 0.0916882736 - - PREDICTED: uncharacterized protein LOC105645814 [Jatropha curcas]
5 Hb_000548_050 0.098157776 - - hypothetical protein POPTR_0008s12570g [Populus trichocarpa]
6 Hb_001828_200 0.0986400184 - - ribosomal protein L13 [Populus trichocarpa]
7 Hb_001623_140 0.1010041414 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 1 [Jatropha curcas]
8 Hb_003299_030 0.1051851919 - - PREDICTED: uncharacterized protein At1g27050 isoform X1 [Jatropha curcas]
9 Hb_000084_030 0.1061948944 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002192_080 0.107725833 - - hypothetical protein B456_013G069200 [Gossypium raimondii]
11 Hb_000394_190 0.1080102243 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
12 Hb_012389_020 0.1084889076 - - hypothetical protein POPTR_0006s05190g [Populus trichocarpa]
13 Hb_012799_110 0.1085658095 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
14 Hb_033095_020 0.1092335364 - - conserved hypothetical protein [Ricinus communis]
15 Hb_086639_070 0.1108468439 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
16 Hb_000621_080 0.1110234525 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001720_010 0.1117047197 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
18 Hb_000649_320 0.1122707002 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
19 Hb_004586_140 0.1130126476 - - PREDICTED: uncharacterized protein LOC105630689 [Jatropha curcas]
20 Hb_008803_090 0.1132559082 - - PREDICTED: COP9 signalosome complex subunit 6a [Jatropha curcas]

Gene co-expression network

sample Hb_052764_050 Hb_052764_050 Hb_001610_110 Hb_001610_110 Hb_052764_050--Hb_001610_110 Hb_001288_080 Hb_001288_080 Hb_052764_050--Hb_001288_080 Hb_012114_060 Hb_012114_060 Hb_052764_050--Hb_012114_060 Hb_000548_050 Hb_000548_050 Hb_052764_050--Hb_000548_050 Hb_001828_200 Hb_001828_200 Hb_052764_050--Hb_001828_200 Hb_001623_140 Hb_001623_140 Hb_052764_050--Hb_001623_140 Hb_001610_110--Hb_001623_140 Hb_004324_340 Hb_004324_340 Hb_001610_110--Hb_004324_340 Hb_001610_110--Hb_001288_080 Hb_000621_080 Hb_000621_080 Hb_001610_110--Hb_000621_080 Hb_086639_070 Hb_086639_070 Hb_001610_110--Hb_086639_070 Hb_001720_010 Hb_001720_010 Hb_001288_080--Hb_001720_010 Hb_001168_040 Hb_001168_040 Hb_001288_080--Hb_001168_040 Hb_001288_080--Hb_001623_140 Hb_001288_080--Hb_004324_340 Hb_012114_060--Hb_000548_050 Hb_005565_040 Hb_005565_040 Hb_012114_060--Hb_005565_040 Hb_000394_190 Hb_000394_190 Hb_012114_060--Hb_000394_190 Hb_012114_060--Hb_001168_040 Hb_000787_170 Hb_000787_170 Hb_012114_060--Hb_000787_170 Hb_000548_050--Hb_005565_040 Hb_012799_110 Hb_012799_110 Hb_000548_050--Hb_012799_110 Hb_011942_080 Hb_011942_080 Hb_000548_050--Hb_011942_080 Hb_000548_050--Hb_000394_190 Hb_007164_020 Hb_007164_020 Hb_001828_200--Hb_007164_020 Hb_134951_010 Hb_134951_010 Hb_001828_200--Hb_134951_010 Hb_001828_200--Hb_001288_080 Hb_001135_020 Hb_001135_020 Hb_001828_200--Hb_001135_020 Hb_002292_010 Hb_002292_010 Hb_001828_200--Hb_002292_010 Hb_001623_140--Hb_001168_040 Hb_001623_140--Hb_001720_010 Hb_023827_040 Hb_023827_040 Hb_001623_140--Hb_023827_040 Hb_001623_140--Hb_004324_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
380.138 348.406 209.158 138.641 219.354 378.088
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
262.964 292.819 193.188 85.192 39.6089

CAGE analysis