Hb_001135_020

Information

Type -
Description -
Location Contig1135: 15430-22091
Sequence    

Annotation

kegg
ID rcu:RCOM_0744890
description erythroblast macrophage protein emp, putative
nr
ID XP_012073466.1
description PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
swissprot
ID Q7SXR3
description Macrophage erythroblast attacher OS=Danio rerio GN=maea PE=2 SV=2
trembl
ID A0A067LFT0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06639 PE=4 SV=1
Gene Ontology
ID GO:0005829
description macrophage erythroblast attacher

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04019: 16490-16678 , PASA_asmbl_04020: 18907-19305 , PASA_asmbl_04021: 19389-19693 , PASA_asmbl_04022: 19335-22141
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001135_020 0.0 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
2 Hb_002292_010 0.0831858499 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]
3 Hb_001288_080 0.0948203907 - - PREDICTED: probable protein phosphatase 2C 50 [Populus euphratica]
4 Hb_007007_050 0.0972639903 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Malus domestica]
5 Hb_001828_200 0.1030063996 - - ribosomal protein L13 [Populus trichocarpa]
6 Hb_004324_340 0.1048331073 - - conserved hypothetical protein [Ricinus communis]
7 Hb_141532_010 0.1151895656 - - PREDICTED: protein SMG9-like [Jatropha curcas]
8 Hb_001720_010 0.1190361816 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
9 Hb_014720_170 0.1194027049 - - glutaredoxin-1, grx1, putative [Ricinus communis]
10 Hb_000768_050 0.1197733009 - - hypothetical protein RCOM_0845740 [Ricinus communis]
11 Hb_002495_070 0.1206646961 - - PREDICTED: uncharacterized protein LOC105634731 [Jatropha curcas]
12 Hb_033095_020 0.1211313698 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000367_200 0.1214807927 - - hypothetical protein CISIN_1g0362003mg, partial [Citrus sinensis]
14 Hb_002784_050 0.1216568894 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
15 Hb_000042_300 0.1220313986 - - -
16 Hb_001195_570 0.1229168411 - - PREDICTED: peroxisomal membrane protein 11A [Jatropha curcas]
17 Hb_019962_030 0.1243642146 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
18 Hb_002675_260 0.1250289791 - - hypothetical protein JCGZ_06227 [Jatropha curcas]
19 Hb_010968_010 0.1252135209 - - Golgi snare 12 isoform 1 [Theobroma cacao]
20 Hb_052764_050 0.126356372 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001135_020 Hb_001135_020 Hb_002292_010 Hb_002292_010 Hb_001135_020--Hb_002292_010 Hb_001288_080 Hb_001288_080 Hb_001135_020--Hb_001288_080 Hb_007007_050 Hb_007007_050 Hb_001135_020--Hb_007007_050 Hb_001828_200 Hb_001828_200 Hb_001135_020--Hb_001828_200 Hb_004324_340 Hb_004324_340 Hb_001135_020--Hb_004324_340 Hb_141532_010 Hb_141532_010 Hb_001135_020--Hb_141532_010 Hb_002292_010--Hb_007007_050 Hb_004363_010 Hb_004363_010 Hb_002292_010--Hb_004363_010 Hb_002292_010--Hb_141532_010 Hb_002639_150 Hb_002639_150 Hb_002292_010--Hb_002639_150 Hb_003687_230 Hb_003687_230 Hb_002292_010--Hb_003687_230 Hb_001720_010 Hb_001720_010 Hb_001288_080--Hb_001720_010 Hb_001610_110 Hb_001610_110 Hb_001288_080--Hb_001610_110 Hb_052764_050 Hb_052764_050 Hb_001288_080--Hb_052764_050 Hb_001168_040 Hb_001168_040 Hb_001288_080--Hb_001168_040 Hb_001623_140 Hb_001623_140 Hb_001288_080--Hb_001623_140 Hb_001288_080--Hb_004324_340 Hb_019962_030 Hb_019962_030 Hb_007007_050--Hb_019962_030 Hb_002687_140 Hb_002687_140 Hb_007007_050--Hb_002687_140 Hb_000808_250 Hb_000808_250 Hb_007007_050--Hb_000808_250 Hb_002784_050 Hb_002784_050 Hb_007007_050--Hb_002784_050 Hb_000359_330 Hb_000359_330 Hb_007007_050--Hb_000359_330 Hb_007164_020 Hb_007164_020 Hb_001828_200--Hb_007164_020 Hb_134951_010 Hb_134951_010 Hb_001828_200--Hb_134951_010 Hb_001828_200--Hb_052764_050 Hb_001828_200--Hb_001288_080 Hb_001828_200--Hb_002292_010 Hb_173953_010 Hb_173953_010 Hb_004324_340--Hb_173953_010 Hb_004324_340--Hb_001610_110 Hb_004324_340--Hb_001623_140 Hb_004324_340--Hb_001720_010 Hb_005928_110 Hb_005928_110 Hb_004324_340--Hb_005928_110 Hb_000175_090 Hb_000175_090 Hb_141532_010--Hb_000175_090 Hb_001142_050 Hb_001142_050 Hb_141532_010--Hb_001142_050 Hb_141532_010--Hb_004363_010 Hb_005565_040 Hb_005565_040 Hb_141532_010--Hb_005565_040 Hb_141532_010--Hb_007007_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.22982 0.667023 0.445913 0.384395 0.797286 0.559964
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.744128 0.739396 0.286983 0.197356 0.0638625

CAGE analysis