Hb_002639_150

Information

Type -
Description -
Location Contig2639: 139389-141914
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27575: 139426-141907
cDNA
(Sanger)
(ID:Location)		 015_H23.ab1: 139656-141831 , 027_N08.ab1: 137781-138492 , 029_E20.ab1: 141634-141852 , 044_B14.ab1: 139600-141890

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002639_150 0.0 - - -
2 Hb_000661_140 0.0519374371 - - PREDICTED: uncharacterized protein LOC105648317 isoform X2 [Jatropha curcas]
3 Hb_000926_310 0.0535581383 - - uncharacterized protein LOC100500241 [Glycine max]
4 Hb_005288_150 0.0679986508 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
5 Hb_058972_010 0.0742811404 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
6 Hb_003687_230 0.0750632253 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
7 Hb_020367_050 0.0753671896 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl pyrophosphate synthase, putative [Ricinus communis]
8 Hb_001329_130 0.0768882764 - - conserved hypothetical protein [Ricinus communis]
9 Hb_027043_020 0.0803850364 - - conserved hypothetical protein [Ricinus communis]
10 Hb_011013_010 0.0817730005 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
11 Hb_002192_080 0.0819442122 - - hypothetical protein B456_013G069200 [Gossypium raimondii]
12 Hb_106552_050 0.0831979041 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]
13 Hb_000610_010 0.0857075154 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
14 Hb_002292_010 0.0860079502 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]
15 Hb_000260_100 0.0860734531 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000676_050 0.086562745 - - PREDICTED: thioredoxin domain-containing protein PLP3B-like [Gossypium raimondii]
17 Hb_001142_050 0.0888374822 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
18 Hb_000003_600 0.0891218704 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1 [Jatropha curcas]
19 Hb_002026_140 0.08987353 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
20 Hb_000808_250 0.0899785129 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]

Gene co-expression network

sample Hb_002639_150 Hb_002639_150 Hb_000661_140 Hb_000661_140 Hb_002639_150--Hb_000661_140 Hb_000926_310 Hb_000926_310 Hb_002639_150--Hb_000926_310 Hb_005288_150 Hb_005288_150 Hb_002639_150--Hb_005288_150 Hb_058972_010 Hb_058972_010 Hb_002639_150--Hb_058972_010 Hb_003687_230 Hb_003687_230 Hb_002639_150--Hb_003687_230 Hb_020367_050 Hb_020367_050 Hb_002639_150--Hb_020367_050 Hb_000661_140--Hb_000926_310 Hb_011013_010 Hb_011013_010 Hb_000661_140--Hb_011013_010 Hb_004785_190 Hb_004785_190 Hb_000661_140--Hb_004785_190 Hb_000661_140--Hb_005288_150 Hb_000661_140--Hb_020367_050 Hb_000926_310--Hb_020367_050 Hb_000926_310--Hb_003687_230 Hb_000926_310--Hb_005288_150 Hb_000368_020 Hb_000368_020 Hb_000926_310--Hb_000368_020 Hb_000260_100 Hb_000260_100 Hb_005288_150--Hb_000260_100 Hb_000141_250 Hb_000141_250 Hb_005288_150--Hb_000141_250 Hb_005288_150--Hb_020367_050 Hb_002997_080 Hb_002997_080 Hb_005288_150--Hb_002997_080 Hb_001329_130 Hb_001329_130 Hb_005288_150--Hb_001329_130 Hb_001195_260 Hb_001195_260 Hb_058972_010--Hb_001195_260 Hb_000576_050 Hb_000576_050 Hb_058972_010--Hb_000576_050 Hb_004122_040 Hb_004122_040 Hb_058972_010--Hb_004122_040 Hb_073973_130 Hb_073973_130 Hb_058972_010--Hb_073973_130 Hb_000107_190 Hb_000107_190 Hb_058972_010--Hb_000107_190 Hb_000610_010 Hb_000610_010 Hb_058972_010--Hb_000610_010 Hb_003687_230--Hb_000610_010 Hb_003292_040 Hb_003292_040 Hb_003687_230--Hb_003292_040 Hb_000009_530 Hb_000009_530 Hb_003687_230--Hb_000009_530 Hb_003687_230--Hb_001329_130 Hb_003078_040 Hb_003078_040 Hb_003687_230--Hb_003078_040 Hb_032208_040 Hb_032208_040 Hb_020367_050--Hb_032208_040 Hb_020367_050--Hb_001329_130 Hb_006960_050 Hb_006960_050 Hb_020367_050--Hb_006960_050 Hb_007982_080 Hb_007982_080 Hb_020367_050--Hb_007982_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
93.7756 39.9072 81.4614 35.7112 75.3028 68.845
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.0184 60.4668 39.6078 22.6156 20.2985

CAGE analysis