Hb_003078_040

Information

Type -
Description -
Location Contig3078: 75213-80541
Sequence    

Annotation

kegg
ID rcu:RCOM_0379120
description histidine triad (hit) protein, putative
nr
ID XP_012085108.1
description PREDICTED: hit family protein 1 isoform X1 [Jatropha curcas]
swissprot
ID O07513
description Protein hit OS=Bacillus subtilis (strain 168) GN=hit PE=1 SV=1
trembl
ID A0A067LDI7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15133 PE=4 SV=1
Gene Ontology
ID GO:0005777
description histidine triad

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32513: 75205-80485 , PASA_asmbl_32515: 76283-77151 , PASA_asmbl_32516: 75632-76019 , PASA_asmbl_32517: 78320-78607
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003078_040 0.0 - - PREDICTED: hit family protein 1 isoform X1 [Jatropha curcas]
2 Hb_028995_040 0.0653070939 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
3 Hb_000866_270 0.0679314208 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
4 Hb_025645_010 0.0682486912 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
5 Hb_000367_200 0.0725524482 - - hypothetical protein CISIN_1g0362003mg, partial [Citrus sinensis]
6 Hb_003687_230 0.0748550348 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
7 Hb_002233_150 0.0756539636 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
8 Hb_001635_170 0.0760079538 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
9 Hb_000059_330 0.07799295 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
10 Hb_004491_010 0.0781478051 - - 60S ribosomal protein L51, putative [Ricinus communis]
11 Hb_000771_120 0.0783395808 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
12 Hb_001404_100 0.0783487042 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K [Gossypium raimondii]
13 Hb_000661_250 0.0788991728 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
14 Hb_005000_210 0.0795784785 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
15 Hb_000302_270 0.0805238415 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
16 Hb_001552_020 0.0833274413 - - PREDICTED: uncharacterized protein LOC105639653 [Jatropha curcas]
17 Hb_000141_040 0.0833725515 - - hypothetical protein CICLE_v10022858mg [Citrus clementina]
18 Hb_003125_200 0.0841634687 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
19 Hb_012389_020 0.0845674268 - - hypothetical protein POPTR_0006s05190g [Populus trichocarpa]
20 Hb_001259_090 0.0847875002 - - hypothetical protein B456_005G056700 [Gossypium raimondii]

Gene co-expression network

sample Hb_003078_040 Hb_003078_040 Hb_028995_040 Hb_028995_040 Hb_003078_040--Hb_028995_040 Hb_000866_270 Hb_000866_270 Hb_003078_040--Hb_000866_270 Hb_025645_010 Hb_025645_010 Hb_003078_040--Hb_025645_010 Hb_000367_200 Hb_000367_200 Hb_003078_040--Hb_000367_200 Hb_003687_230 Hb_003687_230 Hb_003078_040--Hb_003687_230 Hb_002233_150 Hb_002233_150 Hb_003078_040--Hb_002233_150 Hb_001552_020 Hb_001552_020 Hb_028995_040--Hb_001552_020 Hb_028995_040--Hb_000866_270 Hb_004491_010 Hb_004491_010 Hb_028995_040--Hb_004491_010 Hb_004657_050 Hb_004657_050 Hb_028995_040--Hb_004657_050 Hb_002301_140 Hb_002301_140 Hb_028995_040--Hb_002301_140 Hb_001259_090 Hb_001259_090 Hb_000866_270--Hb_001259_090 Hb_002007_060 Hb_002007_060 Hb_000866_270--Hb_002007_060 Hb_023226_040 Hb_023226_040 Hb_000866_270--Hb_023226_040 Hb_001159_140 Hb_001159_140 Hb_000866_270--Hb_001159_140 Hb_000661_250 Hb_000661_250 Hb_000866_270--Hb_000661_250 Hb_001662_070 Hb_001662_070 Hb_025645_010--Hb_001662_070 Hb_000771_120 Hb_000771_120 Hb_025645_010--Hb_000771_120 Hb_000787_050 Hb_000787_050 Hb_025645_010--Hb_000787_050 Hb_003092_040 Hb_003092_040 Hb_025645_010--Hb_003092_040 Hb_001579_030 Hb_001579_030 Hb_025645_010--Hb_001579_030 Hb_007477_070 Hb_007477_070 Hb_025645_010--Hb_007477_070 Hb_005000_210 Hb_005000_210 Hb_000367_200--Hb_005000_210 Hb_002950_100 Hb_002950_100 Hb_000367_200--Hb_002950_100 Hb_002675_260 Hb_002675_260 Hb_000367_200--Hb_002675_260 Hb_000367_200--Hb_000866_270 Hb_000139_410 Hb_000139_410 Hb_000367_200--Hb_000139_410 Hb_000610_010 Hb_000610_010 Hb_003687_230--Hb_000610_010 Hb_003292_040 Hb_003292_040 Hb_003687_230--Hb_003292_040 Hb_000009_530 Hb_000009_530 Hb_003687_230--Hb_000009_530 Hb_000926_310 Hb_000926_310 Hb_003687_230--Hb_000926_310 Hb_001329_130 Hb_001329_130 Hb_003687_230--Hb_001329_130 Hb_011970_030 Hb_011970_030 Hb_002233_150--Hb_011970_030 Hb_002233_150--Hb_000661_250 Hb_002043_190 Hb_002043_190 Hb_002233_150--Hb_002043_190 Hb_010661_030 Hb_010661_030 Hb_002233_150--Hb_010661_030 Hb_002233_150--Hb_003292_040 Hb_000933_180 Hb_000933_180 Hb_002233_150--Hb_000933_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
119.632 69.1345 67.884 46.5271 91.0604 68.9224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
106.628 119.624 73.0557 46.9591 23.7122

CAGE analysis