Hb_002675_260

Information

Type -
Description -
Location Contig2675: 233600-240601
Sequence    

Annotation

kegg
ID rcu:RCOM_0895630
description Katanin p60 ATPase-containing subunit, putative (EC:3.6.4.3)
nr
ID KDP37171.1
description hypothetical protein JCGZ_06227 [Jatropha curcas]
swissprot
ID Q9SEX2
description Katanin p60 ATPase-containing subunit A1 OS=Arabidopsis thaliana GN=AAA1 PE=1 SV=1
trembl
ID A0A067KLP8
description Katanin p60 ATPase-containing subunit A1 OS=Jatropha curcas GN=KATNA1 PE=3 SV=1
Gene Ontology
ID GO:0005524
description katanin p60 atpase-containing subunit a1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27871: 226170-232884
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002675_260 0.0 - - hypothetical protein JCGZ_06227 [Jatropha curcas]
2 Hb_000207_130 0.0876432825 - - PREDICTED: calcium-dependent protein kinase 11 [Jatropha curcas]
3 Hb_005137_050 0.0880624178 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
4 Hb_003687_230 0.0894162673 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
5 Hb_003078_040 0.0913474241 - - PREDICTED: hit family protein 1 isoform X1 [Jatropha curcas]
6 Hb_007632_110 0.0919921154 - - chromatin regulatory protein sir2, putative [Ricinus communis]
7 Hb_000771_180 0.0936339959 - - polypyrimidine tract binding protein, putative [Ricinus communis]
8 Hb_032208_040 0.0936809229 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 [Populus euphratica]
9 Hb_006355_010 0.0938639401 - - PREDICTED: protein NLRC3 [Jatropha curcas]
10 Hb_000181_120 0.0941469001 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
11 Hb_000926_310 0.0946221983 - - uncharacterized protein LOC100500241 [Glycine max]
12 Hb_000061_470 0.0946613015 - - PREDICTED: LOW QUALITY PROTEIN: DNA annealing helicase and endonuclease ZRANB3 [Jatropha curcas]
13 Hb_000367_200 0.0973417166 - - hypothetical protein CISIN_1g0362003mg, partial [Citrus sinensis]
14 Hb_002192_080 0.097934222 - - hypothetical protein B456_013G069200 [Gossypium raimondii]
15 Hb_020367_050 0.0983936285 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl pyrophosphate synthase, putative [Ricinus communis]
16 Hb_000342_110 0.0991536939 - - PREDICTED: uncharacterized protein LOC105638174 [Jatropha curcas]
17 Hb_000421_070 0.099347958 - - WD-repeat protein, putative [Ricinus communis]
18 Hb_022250_030 0.0996291239 - - conserved hypothetical protein [Ricinus communis]
19 Hb_008803_090 0.1001753367 - - PREDICTED: COP9 signalosome complex subunit 6a [Jatropha curcas]
20 Hb_000308_030 0.1004072753 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]

Gene co-expression network

sample Hb_002675_260 Hb_002675_260 Hb_000207_130 Hb_000207_130 Hb_002675_260--Hb_000207_130 Hb_005137_050 Hb_005137_050 Hb_002675_260--Hb_005137_050 Hb_003687_230 Hb_003687_230 Hb_002675_260--Hb_003687_230 Hb_003078_040 Hb_003078_040 Hb_002675_260--Hb_003078_040 Hb_007632_110 Hb_007632_110 Hb_002675_260--Hb_007632_110 Hb_000771_180 Hb_000771_180 Hb_002675_260--Hb_000771_180 Hb_004055_150 Hb_004055_150 Hb_000207_130--Hb_004055_150 Hb_006620_020 Hb_006620_020 Hb_000207_130--Hb_006620_020 Hb_000853_230 Hb_000853_230 Hb_000207_130--Hb_000853_230 Hb_032208_040 Hb_032208_040 Hb_000207_130--Hb_032208_040 Hb_106552_050 Hb_106552_050 Hb_000207_130--Hb_106552_050 Hb_002078_020 Hb_002078_020 Hb_000207_130--Hb_002078_020 Hb_152175_010 Hb_152175_010 Hb_005137_050--Hb_152175_010 Hb_001247_130 Hb_001247_130 Hb_005137_050--Hb_001247_130 Hb_002411_030 Hb_002411_030 Hb_005137_050--Hb_002411_030 Hb_005137_050--Hb_032208_040 Hb_000061_470 Hb_000061_470 Hb_005137_050--Hb_000061_470 Hb_000130_240 Hb_000130_240 Hb_005137_050--Hb_000130_240 Hb_000610_010 Hb_000610_010 Hb_003687_230--Hb_000610_010 Hb_003292_040 Hb_003292_040 Hb_003687_230--Hb_003292_040 Hb_000009_530 Hb_000009_530 Hb_003687_230--Hb_000009_530 Hb_000926_310 Hb_000926_310 Hb_003687_230--Hb_000926_310 Hb_001329_130 Hb_001329_130 Hb_003687_230--Hb_001329_130 Hb_003687_230--Hb_003078_040 Hb_028995_040 Hb_028995_040 Hb_003078_040--Hb_028995_040 Hb_000866_270 Hb_000866_270 Hb_003078_040--Hb_000866_270 Hb_025645_010 Hb_025645_010 Hb_003078_040--Hb_025645_010 Hb_000367_200 Hb_000367_200 Hb_003078_040--Hb_000367_200 Hb_002233_150 Hb_002233_150 Hb_003078_040--Hb_002233_150 Hb_001105_010 Hb_001105_010 Hb_007632_110--Hb_001105_010 Hb_003467_010 Hb_003467_010 Hb_007632_110--Hb_003467_010 Hb_011942_080 Hb_011942_080 Hb_007632_110--Hb_011942_080 Hb_006355_010 Hb_006355_010 Hb_007632_110--Hb_006355_010 Hb_004450_060 Hb_004450_060 Hb_007632_110--Hb_004450_060 Hb_007632_110--Hb_000207_130 Hb_002783_310 Hb_002783_310 Hb_000771_180--Hb_002783_310 Hb_050847_020 Hb_050847_020 Hb_000771_180--Hb_050847_020 Hb_000160_350 Hb_000160_350 Hb_000771_180--Hb_000160_350 Hb_140049_030 Hb_140049_030 Hb_000771_180--Hb_140049_030 Hb_000334_270 Hb_000334_270 Hb_000771_180--Hb_000334_270 Hb_000664_070 Hb_000664_070 Hb_000771_180--Hb_000664_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.24586 1.44063 1.36732 0.543188 1.71578 1.23122
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.56399 1.44638 0.855197 1.01533 0.408266

CAGE analysis