Hb_000130_240

Information

Type -
Description -
Location Contig130: 207823-213320
Sequence    

Annotation

kegg
ID rcu:RCOM_1520720
description hypothetical protein
nr
ID XP_002524266.1
description hypothetical protein RCOM_1520720 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SE51
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1520720 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08909: 210800-211794 , PASA_asmbl_08910: 209640-211794 , PASA_asmbl_08911: 209913-210284 , PASA_asmbl_08912: 211796-212508
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000130_240 0.0 - - hypothetical protein RCOM_1520720 [Ricinus communis]
2 Hb_111198_010 0.0722425285 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
3 Hb_001247_130 0.0771178581 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
4 Hb_000307_190 0.0774858628 - - PREDICTED: pentatricopeptide repeat-containing protein At1g20300, mitochondrial-like [Populus euphratica]
5 Hb_005137_050 0.0798281272 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
6 Hb_002411_030 0.0823179957 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
7 Hb_032208_040 0.0864197112 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 [Populus euphratica]
8 Hb_000732_120 0.0871696369 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
9 Hb_000070_080 0.089826263 - - PREDICTED: uncharacterized protein LOC105645742 isoform X2 [Jatropha curcas]
10 Hb_005541_010 0.089967688 - - PREDICTED: uncharacterized protein LOC105629250 [Jatropha curcas]
11 Hb_000402_080 0.0901728309 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
12 Hb_008103_060 0.0901729196 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
13 Hb_112798_020 0.0910969536 - - dnajc14 protein, putative [Ricinus communis]
14 Hb_031527_020 0.0913175768 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
15 Hb_002078_110 0.092508232 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
16 Hb_001780_020 0.0933832712 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002078_220 0.0957835146 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
18 Hb_000140_080 0.0960890042 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
19 Hb_000275_170 0.0964289501 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
20 Hb_002876_130 0.0971282654 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]

Gene co-expression network

sample Hb_000130_240 Hb_000130_240 Hb_111198_010 Hb_111198_010 Hb_000130_240--Hb_111198_010 Hb_001247_130 Hb_001247_130 Hb_000130_240--Hb_001247_130 Hb_000307_190 Hb_000307_190 Hb_000130_240--Hb_000307_190 Hb_005137_050 Hb_005137_050 Hb_000130_240--Hb_005137_050 Hb_002411_030 Hb_002411_030 Hb_000130_240--Hb_002411_030 Hb_032208_040 Hb_032208_040 Hb_000130_240--Hb_032208_040 Hb_031527_020 Hb_031527_020 Hb_111198_010--Hb_031527_020 Hb_032202_110 Hb_032202_110 Hb_111198_010--Hb_032202_110 Hb_003633_070 Hb_003633_070 Hb_111198_010--Hb_003633_070 Hb_002078_110 Hb_002078_110 Hb_111198_010--Hb_002078_110 Hb_005489_080 Hb_005489_080 Hb_111198_010--Hb_005489_080 Hb_010738_010 Hb_010738_010 Hb_111198_010--Hb_010738_010 Hb_001247_130--Hb_032208_040 Hb_001247_130--Hb_005137_050 Hb_001728_050 Hb_001728_050 Hb_001247_130--Hb_001728_050 Hb_004357_020 Hb_004357_020 Hb_001247_130--Hb_004357_020 Hb_001946_040 Hb_001946_040 Hb_001247_130--Hb_001946_040 Hb_000915_060 Hb_000915_060 Hb_000307_190--Hb_000915_060 Hb_000307_190--Hb_005137_050 Hb_000256_140 Hb_000256_140 Hb_000307_190--Hb_000256_140 Hb_000307_190--Hb_002411_030 Hb_003117_020 Hb_003117_020 Hb_000307_190--Hb_003117_020 Hb_152175_010 Hb_152175_010 Hb_005137_050--Hb_152175_010 Hb_005137_050--Hb_002411_030 Hb_005137_050--Hb_032208_040 Hb_000061_470 Hb_000061_470 Hb_005137_050--Hb_000061_470 Hb_000983_090 Hb_000983_090 Hb_002411_030--Hb_000983_090 Hb_005541_010 Hb_005541_010 Hb_002411_030--Hb_005541_010 Hb_002411_030--Hb_001728_050 Hb_005675_040 Hb_005675_040 Hb_002411_030--Hb_005675_040 Hb_020367_050 Hb_020367_050 Hb_032208_040--Hb_020367_050 Hb_004055_150 Hb_004055_150 Hb_032208_040--Hb_004055_150 Hb_005965_030 Hb_005965_030 Hb_032208_040--Hb_005965_030 Hb_006960_050 Hb_006960_050 Hb_032208_040--Hb_006960_050 Hb_001926_030 Hb_001926_030 Hb_032208_040--Hb_001926_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.2652 15.5101 10.6286 6.1161 13.7261 10.691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.3484 11.8171 8.40598 7.52415 3.88305

CAGE analysis