Hb_000307_190

Information

Type -
Description -
Location Contig307: 188090-189232
Sequence    

Annotation

kegg
ID pop:POPTR_0005s26670g
description POPTRDRAFT_206524; hypothetical protein
nr
ID XP_011003090.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g20300, mitochondrial-like [Populus euphratica]
swissprot
ID Q9LN22
description Pentatricopeptide repeat-containing protein At1g20300, mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2 SV=1
trembl
ID B9H5C0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s26670g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32429: 187986-188542 , PASA_asmbl_32430: 188628-189360
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000307_190 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g20300, mitochondrial-like [Populus euphratica]
2 Hb_000130_240 0.0774858628 - - hypothetical protein RCOM_1520720 [Ricinus communis]
3 Hb_000915_060 0.0989424685 - - PREDICTED: uncharacterized protein LOC105628864 [Jatropha curcas]
4 Hb_005137_050 0.1006957577 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
5 Hb_000256_140 0.1075241854 - - PREDICTED: uncharacterized protein LOC105637585 isoform X1 [Jatropha curcas]
6 Hb_002411_030 0.1092888743 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
7 Hb_003117_020 0.1101981087 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]
8 Hb_000260_180 0.1108495575 - - PREDICTED: KH domain-containing protein At2g38610 [Jatropha curcas]
9 Hb_000556_170 0.1122856623 - - PREDICTED: uncharacterized protein LOC105643102 isoform X2 [Jatropha curcas]
10 Hb_001247_130 0.112471695 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
11 Hb_003927_040 0.112694013 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
12 Hb_001410_020 0.1157003095 - - cdk8, putative [Ricinus communis]
13 Hb_111198_010 0.1161971725 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
14 Hb_010381_030 0.1166270809 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
15 Hb_032208_040 0.1169967273 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 [Populus euphratica]
16 Hb_065525_060 0.1185425308 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004870_050 0.1189105127 - - PREDICTED: ATP-dependent RNA helicase DBP3 [Jatropha curcas]
18 Hb_000160_350 0.1194545292 - - PREDICTED: double-stranded RNA-binding protein 4 isoform X3 [Vitis vinifera]
19 Hb_000723_110 0.1197527458 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
20 Hb_000487_420 0.1199345999 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At1g04390 [Jatropha curcas]

Gene co-expression network

sample Hb_000307_190 Hb_000307_190 Hb_000130_240 Hb_000130_240 Hb_000307_190--Hb_000130_240 Hb_000915_060 Hb_000915_060 Hb_000307_190--Hb_000915_060 Hb_005137_050 Hb_005137_050 Hb_000307_190--Hb_005137_050 Hb_000256_140 Hb_000256_140 Hb_000307_190--Hb_000256_140 Hb_002411_030 Hb_002411_030 Hb_000307_190--Hb_002411_030 Hb_003117_020 Hb_003117_020 Hb_000307_190--Hb_003117_020 Hb_111198_010 Hb_111198_010 Hb_000130_240--Hb_111198_010 Hb_001247_130 Hb_001247_130 Hb_000130_240--Hb_001247_130 Hb_000130_240--Hb_005137_050 Hb_000130_240--Hb_002411_030 Hb_032208_040 Hb_032208_040 Hb_000130_240--Hb_032208_040 Hb_000373_230 Hb_000373_230 Hb_000915_060--Hb_000373_230 Hb_003849_140 Hb_003849_140 Hb_000915_060--Hb_003849_140 Hb_001277_020 Hb_001277_020 Hb_000915_060--Hb_001277_020 Hb_000723_110 Hb_000723_110 Hb_000915_060--Hb_000723_110 Hb_001410_020 Hb_001410_020 Hb_000915_060--Hb_001410_020 Hb_000236_470 Hb_000236_470 Hb_000915_060--Hb_000236_470 Hb_152175_010 Hb_152175_010 Hb_005137_050--Hb_152175_010 Hb_005137_050--Hb_001247_130 Hb_005137_050--Hb_002411_030 Hb_005137_050--Hb_032208_040 Hb_000061_470 Hb_000061_470 Hb_005137_050--Hb_000061_470 Hb_005288_010 Hb_005288_010 Hb_000256_140--Hb_005288_010 Hb_000322_150 Hb_000322_150 Hb_000256_140--Hb_000322_150 Hb_000256_140--Hb_002411_030 Hb_004440_040 Hb_004440_040 Hb_000256_140--Hb_004440_040 Hb_002636_100 Hb_002636_100 Hb_000256_140--Hb_002636_100 Hb_000983_090 Hb_000983_090 Hb_002411_030--Hb_000983_090 Hb_005541_010 Hb_005541_010 Hb_002411_030--Hb_005541_010 Hb_001728_050 Hb_001728_050 Hb_002411_030--Hb_001728_050 Hb_005675_040 Hb_005675_040 Hb_002411_030--Hb_005675_040 Hb_140049_040 Hb_140049_040 Hb_003117_020--Hb_140049_040 Hb_002542_130 Hb_002542_130 Hb_003117_020--Hb_002542_130 Hb_000103_100 Hb_000103_100 Hb_003117_020--Hb_000103_100 Hb_002477_250 Hb_002477_250 Hb_003117_020--Hb_002477_250 Hb_009780_100 Hb_009780_100 Hb_003117_020--Hb_009780_100 Hb_003633_070 Hb_003633_070 Hb_003117_020--Hb_003633_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.1889 10.087 6.62191 2.78841 6.4546 4.46547
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.23679 7.00388 3.39015 4.70765 2.51378

CAGE analysis