Hb_009780_100

Information

Type transcription factor
Description TF Family: GeBP
Location Contig9780: 110511-111446
Sequence    

Annotation

kegg
ID vvi:100853960
description uncharacterized LOC100853960
nr
ID XP_012077808.1
description PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KAB0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13441 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64253: 110549-110700 , PASA_asmbl_64254: 110757-110963
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009780_100 0.0 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
2 Hb_001243_060 0.0580869465 - - PREDICTED: probable magnesium transporter NIPA6 [Jatropha curcas]
3 Hb_009771_100 0.0710368559 - - PREDICTED: uncharacterized protein LOC105141784 [Populus euphratica]
4 Hb_003633_070 0.076396047 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
5 Hb_006615_120 0.0769838547 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
6 Hb_003117_020 0.0774499672 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]
7 Hb_000230_430 0.0776768133 - - catalytic, putative [Ricinus communis]
8 Hb_000780_170 0.0785245497 - - PREDICTED: OBERON-like protein [Jatropha curcas]
9 Hb_009112_010 0.0801504675 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
10 Hb_003373_040 0.0817552949 - - hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]
11 Hb_000061_490 0.0819155261 - - hypothetical protein CISIN_1g0362002mg, partial [Citrus sinensis]
12 Hb_002477_250 0.0822268217 - - DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus communis]
13 Hb_000162_280 0.0832197996 - - PREDICTED: CTL-like protein DDB_G0288717 [Populus euphratica]
14 Hb_000264_080 0.0860844485 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
15 Hb_000457_050 0.0885296659 - - PREDICTED: tether containing UBX domain for GLUT4 [Jatropha curcas]
16 Hb_000116_060 0.0887718672 - - plant ubiquilin, putative [Ricinus communis]
17 Hb_000236_220 0.0892580412 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
18 Hb_002081_120 0.089890932 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
19 Hb_004631_190 0.0899420212 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
20 Hb_002325_040 0.0903756622 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_009780_100 Hb_009780_100 Hb_001243_060 Hb_001243_060 Hb_009780_100--Hb_001243_060 Hb_009771_100 Hb_009771_100 Hb_009780_100--Hb_009771_100 Hb_003633_070 Hb_003633_070 Hb_009780_100--Hb_003633_070 Hb_006615_120 Hb_006615_120 Hb_009780_100--Hb_006615_120 Hb_003117_020 Hb_003117_020 Hb_009780_100--Hb_003117_020 Hb_000230_430 Hb_000230_430 Hb_009780_100--Hb_000230_430 Hb_000116_060 Hb_000116_060 Hb_001243_060--Hb_000116_060 Hb_001243_060--Hb_000230_430 Hb_000331_330 Hb_000331_330 Hb_001243_060--Hb_000331_330 Hb_003858_090 Hb_003858_090 Hb_001243_060--Hb_003858_090 Hb_001141_370 Hb_001141_370 Hb_001243_060--Hb_001141_370 Hb_031711_010 Hb_031711_010 Hb_009771_100--Hb_031711_010 Hb_011909_060 Hb_011909_060 Hb_009771_100--Hb_011909_060 Hb_009771_100--Hb_001141_370 Hb_000457_050 Hb_000457_050 Hb_009771_100--Hb_000457_050 Hb_000061_490 Hb_000061_490 Hb_009771_100--Hb_000061_490 Hb_001799_050 Hb_001799_050 Hb_003633_070--Hb_001799_050 Hb_000418_140 Hb_000418_140 Hb_003633_070--Hb_000418_140 Hb_009112_010 Hb_009112_010 Hb_003633_070--Hb_009112_010 Hb_000162_280 Hb_000162_280 Hb_003633_070--Hb_000162_280 Hb_001143_250 Hb_001143_250 Hb_003633_070--Hb_001143_250 Hb_000640_310 Hb_000640_310 Hb_003633_070--Hb_000640_310 Hb_004129_070 Hb_004129_070 Hb_006615_120--Hb_004129_070 Hb_006615_120--Hb_000162_280 Hb_006615_120--Hb_009112_010 Hb_000174_060 Hb_000174_060 Hb_006615_120--Hb_000174_060 Hb_002276_240 Hb_002276_240 Hb_006615_120--Hb_002276_240 Hb_001033_050 Hb_001033_050 Hb_006615_120--Hb_001033_050 Hb_140049_040 Hb_140049_040 Hb_003117_020--Hb_140049_040 Hb_002542_130 Hb_002542_130 Hb_003117_020--Hb_002542_130 Hb_000103_100 Hb_000103_100 Hb_003117_020--Hb_000103_100 Hb_002477_250 Hb_002477_250 Hb_003117_020--Hb_002477_250 Hb_003117_020--Hb_003633_070 Hb_002902_020 Hb_002902_020 Hb_000230_430--Hb_002902_020 Hb_004631_190 Hb_004631_190 Hb_000230_430--Hb_004631_190 Hb_000264_070 Hb_000264_070 Hb_000230_430--Hb_000264_070 Hb_118840_050 Hb_118840_050 Hb_000230_430--Hb_118840_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.6338 21.6427 10.5305 10.629 13.4731 13.8497
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.06601 7.01555 6.03035 6.78599 5.90625

CAGE analysis