Hb_000230_430

Information

Type -
Description -
Location Contig230: 391592-399122
Sequence    

Annotation

kegg
ID rcu:RCOM_0678240
description catalytic, putative
nr
ID XP_002516800.1
description catalytic, putative [Ricinus communis]
swissprot
ID P54567
description Uncharacterized protein YqkD OS=Bacillus subtilis (strain 168) GN=yqkD PE=4 SV=1
trembl
ID B9RST1
description Catalytic, putative OS=Ricinus communis GN=RCOM_0678240 PE=4 SV=1
Gene Ontology
ID GO:0005525
description alpha beta-hydrolases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24052: 391650-399136
cDNA
(Sanger)
(ID:Location)		 004_F06.ab1: 391650-394497

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_430 0.0 - - catalytic, putative [Ricinus communis]
2 Hb_001243_060 0.0587289964 - - PREDICTED: probable magnesium transporter NIPA6 [Jatropha curcas]
3 Hb_002902_020 0.0639657793 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
4 Hb_004631_190 0.0689490749 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
5 Hb_000264_070 0.071587568 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
6 Hb_009780_100 0.0776768133 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
7 Hb_118840_050 0.0779573937 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
8 Hb_000625_120 0.0781753997 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
9 Hb_000679_340 0.0788487899 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
10 Hb_000116_060 0.0793097395 - - plant ubiquilin, putative [Ricinus communis]
11 Hb_000718_070 0.0798121289 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001140_030 0.0822015023 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
13 Hb_000069_590 0.083079635 - - auxin-responsive GH3 family protein [Hevea brasiliensis]
14 Hb_001405_190 0.0844554776 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
15 Hb_003680_230 0.0846830642 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
16 Hb_001077_030 0.084962831 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]
17 Hb_143766_110 0.085203295 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 1 [Jatropha curcas]
18 Hb_003633_070 0.0854108927 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
19 Hb_009112_010 0.0856028823 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
20 Hb_006615_120 0.0861066356 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]

Gene co-expression network

sample Hb_000230_430 Hb_000230_430 Hb_001243_060 Hb_001243_060 Hb_000230_430--Hb_001243_060 Hb_002902_020 Hb_002902_020 Hb_000230_430--Hb_002902_020 Hb_004631_190 Hb_004631_190 Hb_000230_430--Hb_004631_190 Hb_000264_070 Hb_000264_070 Hb_000230_430--Hb_000264_070 Hb_009780_100 Hb_009780_100 Hb_000230_430--Hb_009780_100 Hb_118840_050 Hb_118840_050 Hb_000230_430--Hb_118840_050 Hb_000116_060 Hb_000116_060 Hb_001243_060--Hb_000116_060 Hb_001243_060--Hb_009780_100 Hb_000331_330 Hb_000331_330 Hb_001243_060--Hb_000331_330 Hb_003858_090 Hb_003858_090 Hb_001243_060--Hb_003858_090 Hb_001141_370 Hb_001141_370 Hb_001243_060--Hb_001141_370 Hb_001231_030 Hb_001231_030 Hb_002902_020--Hb_001231_030 Hb_096819_010 Hb_096819_010 Hb_002902_020--Hb_096819_010 Hb_000345_490 Hb_000345_490 Hb_002902_020--Hb_000345_490 Hb_002282_060 Hb_002282_060 Hb_002902_020--Hb_002282_060 Hb_002902_020--Hb_000264_070 Hb_001405_190 Hb_001405_190 Hb_004631_190--Hb_001405_190 Hb_009112_010 Hb_009112_010 Hb_004631_190--Hb_009112_010 Hb_001140_030 Hb_001140_030 Hb_004631_190--Hb_001140_030 Hb_000718_070 Hb_000718_070 Hb_004631_190--Hb_000718_070 Hb_000661_020 Hb_000661_020 Hb_004631_190--Hb_000661_020 Hb_004032_230 Hb_004032_230 Hb_000264_070--Hb_004032_230 Hb_002477_250 Hb_002477_250 Hb_000264_070--Hb_002477_250 Hb_000023_320 Hb_000023_320 Hb_000264_070--Hb_000023_320 Hb_000264_070--Hb_001405_190 Hb_001231_090 Hb_001231_090 Hb_000264_070--Hb_001231_090 Hb_102438_030 Hb_102438_030 Hb_000264_070--Hb_102438_030 Hb_009771_100 Hb_009771_100 Hb_009780_100--Hb_009771_100 Hb_003633_070 Hb_003633_070 Hb_009780_100--Hb_003633_070 Hb_006615_120 Hb_006615_120 Hb_009780_100--Hb_006615_120 Hb_003117_020 Hb_003117_020 Hb_009780_100--Hb_003117_020 Hb_000917_160 Hb_000917_160 Hb_118840_050--Hb_000917_160 Hb_000191_130 Hb_000191_130 Hb_118840_050--Hb_000191_130 Hb_000062_470 Hb_000062_470 Hb_118840_050--Hb_000062_470 Hb_000577_030 Hb_000577_030 Hb_118840_050--Hb_000577_030 Hb_001047_200 Hb_001047_200 Hb_118840_050--Hb_001047_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.2072 54.0166 40.3576 27.4108 47.2934 40.2694
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.1678 13.8484 15.7519 17.2158 19.2903

CAGE analysis