Hb_000345_490

Information

Type -
Description -
Location Contig345: 385113-393431
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02400g
description POPTRDRAFT_823621; hypothetical protein
nr
ID XP_012089066.1
description PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
swissprot
ID Q8RXF8
description Mitochondrial Rho GTPase 1 OS=Arabidopsis thaliana GN=MIRO1 PE=1 SV=1
trembl
ID A0A067JL15
description Mitochondrial Rho GTPase OS=Jatropha curcas GN=JCGZ_23356 PE=3 SV=1
Gene Ontology
ID GO:0005741
description mitochondrial rho gtpase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36038: 385221-393375
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_490 0.0 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
2 Hb_000024_120 0.0585954175 - - PREDICTED: uncharacterized protein LOC105122546 isoform X1 [Populus euphratica]
3 Hb_005610_080 0.0811120175 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002902_020 0.0821647812 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
5 Hb_001454_220 0.091105062 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
6 Hb_000625_120 0.0911447097 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
7 Hb_005054_190 0.0912094241 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
8 Hb_000077_120 0.0921508904 - - PREDICTED: two pore calcium channel protein 1 [Jatropha curcas]
9 Hb_000116_510 0.096168834 - - PREDICTED: RNA-binding protein 24-A-like isoform X2 [Jatropha curcas]
10 Hb_003430_030 0.0972280899 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
11 Hb_002073_280 0.0984711935 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
12 Hb_096819_010 0.0994580005 - - PREDICTED: GRIP and coiled-coil domain-containing protein 2 isoform X4 [Jatropha curcas]
13 Hb_002291_060 0.1002735494 - - PREDICTED: splicing factor 3A subunit 3-like isoform X1 [Fragaria vesca subsp. vesca]
14 Hb_000227_310 0.1021488224 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
15 Hb_009449_090 0.1028589033 - - PREDICTED: RNA-binding protein 25 isoform X1 [Jatropha curcas]
16 Hb_007576_220 0.1067465497 - - PREDICTED: kanadaptin [Jatropha curcas]
17 Hb_000230_430 0.1067829344 - - catalytic, putative [Ricinus communis]
18 Hb_030545_030 0.1070612567 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
19 Hb_010287_030 0.1074897759 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001231_030 0.1079322832 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]

Gene co-expression network

sample Hb_000345_490 Hb_000345_490 Hb_000024_120 Hb_000024_120 Hb_000345_490--Hb_000024_120 Hb_005610_080 Hb_005610_080 Hb_000345_490--Hb_005610_080 Hb_002902_020 Hb_002902_020 Hb_000345_490--Hb_002902_020 Hb_001454_220 Hb_001454_220 Hb_000345_490--Hb_001454_220 Hb_000625_120 Hb_000625_120 Hb_000345_490--Hb_000625_120 Hb_005054_190 Hb_005054_190 Hb_000345_490--Hb_005054_190 Hb_000024_120--Hb_005610_080 Hb_009449_090 Hb_009449_090 Hb_000024_120--Hb_009449_090 Hb_000024_120--Hb_005054_190 Hb_003430_030 Hb_003430_030 Hb_000024_120--Hb_003430_030 Hb_000116_510 Hb_000116_510 Hb_000024_120--Hb_000116_510 Hb_006132_040 Hb_006132_040 Hb_005610_080--Hb_006132_040 Hb_005610_080--Hb_003430_030 Hb_005610_080--Hb_005054_190 Hb_000890_010 Hb_000890_010 Hb_005610_080--Hb_000890_010 Hb_000230_430 Hb_000230_430 Hb_002902_020--Hb_000230_430 Hb_001231_030 Hb_001231_030 Hb_002902_020--Hb_001231_030 Hb_096819_010 Hb_096819_010 Hb_002902_020--Hb_096819_010 Hb_002282_060 Hb_002282_060 Hb_002902_020--Hb_002282_060 Hb_000264_070 Hb_000264_070 Hb_002902_020--Hb_000264_070 Hb_001454_220--Hb_000024_120 Hb_002073_280 Hb_002073_280 Hb_001454_220--Hb_002073_280 Hb_001454_220--Hb_002902_020 Hb_001454_220--Hb_000230_430 Hb_007576_220 Hb_007576_220 Hb_001454_220--Hb_007576_220 Hb_000625_120--Hb_000230_430 Hb_012114_050 Hb_012114_050 Hb_000625_120--Hb_012114_050 Hb_007193_110 Hb_007193_110 Hb_000625_120--Hb_007193_110 Hb_118840_050 Hb_118840_050 Hb_000625_120--Hb_118840_050 Hb_007017_070 Hb_007017_070 Hb_000625_120--Hb_007017_070 Hb_005054_190--Hb_003430_030 Hb_000363_280 Hb_000363_280 Hb_005054_190--Hb_000363_280 Hb_011918_050 Hb_011918_050 Hb_005054_190--Hb_011918_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.997 86.4587 75.5303 30.8073 61.4257 49.2337
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.1084 8.02084 11.8504 26.1494 29.5277

CAGE analysis