Hb_011918_050

Information

Type -
Description -
Location Contig11918: 85725-88302
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05674: 86096-86198
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011918_050 0.0 - - -
2 Hb_016734_090 0.0753564629 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
3 Hb_002739_130 0.0805375401 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Populus euphratica]
4 Hb_001269_200 0.0892754599 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
5 Hb_000023_320 0.0909561461 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005288_080 0.0909912187 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005054_190 0.0924454651 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
8 Hb_000156_160 0.0942107726 - - PREDICTED: urease accessory protein G [Jatropha curcas]
9 Hb_006452_160 0.0947432376 - - structural constituent of ribosome, putative [Ricinus communis]
10 Hb_000661_020 0.0956394575 - - BnaC08g27190D [Brassica napus]
11 Hb_004631_190 0.0984207458 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
12 Hb_000679_340 0.0998769624 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
13 Hb_000525_100 0.1021059486 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
14 Hb_000922_020 0.104019004 - - protein binding protein, putative [Ricinus communis]
15 Hb_000563_330 0.1041003597 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
16 Hb_004079_120 0.106380419 - - PREDICTED: splicing factor, arginine/serine-rich 19 [Jatropha curcas]
17 Hb_002902_020 0.1067900698 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
18 Hb_001405_190 0.1074781577 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
19 Hb_000317_060 0.110135088 - - PREDICTED: uncharacterized protein LOC105647051 [Jatropha curcas]
20 Hb_001674_040 0.1103146026 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 23 [Jatropha curcas]

Gene co-expression network

sample Hb_011918_050 Hb_011918_050 Hb_016734_090 Hb_016734_090 Hb_011918_050--Hb_016734_090 Hb_002739_130 Hb_002739_130 Hb_011918_050--Hb_002739_130 Hb_001269_200 Hb_001269_200 Hb_011918_050--Hb_001269_200 Hb_000023_320 Hb_000023_320 Hb_011918_050--Hb_000023_320 Hb_005288_080 Hb_005288_080 Hb_011918_050--Hb_005288_080 Hb_005054_190 Hb_005054_190 Hb_011918_050--Hb_005054_190 Hb_016734_090--Hb_002739_130 Hb_006452_160 Hb_006452_160 Hb_016734_090--Hb_006452_160 Hb_016734_090--Hb_001269_200 Hb_000563_330 Hb_000563_330 Hb_016734_090--Hb_000563_330 Hb_000661_020 Hb_000661_020 Hb_016734_090--Hb_000661_020 Hb_002739_130--Hb_006452_160 Hb_002739_130--Hb_000563_330 Hb_002739_130--Hb_000661_020 Hb_000679_340 Hb_000679_340 Hb_002739_130--Hb_000679_340 Hb_001269_200--Hb_000563_330 Hb_039605_010 Hb_039605_010 Hb_001269_200--Hb_039605_010 Hb_001269_200--Hb_002739_130 Hb_001269_200--Hb_006452_160 Hb_000926_010 Hb_000926_010 Hb_000023_320--Hb_000926_010 Hb_001636_050 Hb_001636_050 Hb_000023_320--Hb_001636_050 Hb_000264_070 Hb_000264_070 Hb_000023_320--Hb_000264_070 Hb_001047_200 Hb_001047_200 Hb_000023_320--Hb_001047_200 Hb_000023_320--Hb_000679_340 Hb_143766_110 Hb_143766_110 Hb_000023_320--Hb_143766_110 Hb_000922_020 Hb_000922_020 Hb_005288_080--Hb_000922_020 Hb_000525_100 Hb_000525_100 Hb_005288_080--Hb_000525_100 Hb_005288_080--Hb_000679_340 Hb_005288_080--Hb_000264_070 Hb_001077_030 Hb_001077_030 Hb_005288_080--Hb_001077_030 Hb_000156_160 Hb_000156_160 Hb_005288_080--Hb_000156_160 Hb_003430_030 Hb_003430_030 Hb_005054_190--Hb_003430_030 Hb_000024_120 Hb_000024_120 Hb_005054_190--Hb_000024_120 Hb_000363_280 Hb_000363_280 Hb_005054_190--Hb_000363_280 Hb_005610_080 Hb_005610_080 Hb_005054_190--Hb_005610_080 Hb_000345_490 Hb_000345_490 Hb_005054_190--Hb_000345_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.7241 19.901 19.7654 9.74152 16.0019 15.3727
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.82168 7.27936 3.17718 7.5705 11.0506

CAGE analysis