Hb_003430_030

Information

Type -
Description -
Location Contig3430: 19625-25993
Sequence    

Annotation

kegg
ID pmum:103336600
description U4/U6 small nuclear ribonucleoprotein Prp31-like
nr
ID XP_012085347.1
description PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
swissprot
ID Q5U5C5
description U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus laevis GN=prpf31 PE=2 SV=1
trembl
ID A0A067K434
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17722 PE=4 SV=1
Gene Ontology
ID GO:0019013
description u4 u6 small nuclear ribonucleoprotein prp31

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35863: 19615-22549
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003430_030 0.0 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
2 Hb_005054_190 0.0651737891 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
3 Hb_000363_280 0.0744748124 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: angiomotin [Cucumis sativus]
4 Hb_005610_080 0.0775011544 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000024_120 0.0834313889 - - PREDICTED: uncharacterized protein LOC105122546 isoform X1 [Populus euphratica]
6 Hb_000120_420 0.0895686106 - - PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
7 Hb_000345_490 0.0972280899 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
8 Hb_011909_060 0.0975387017 - - PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]
9 Hb_000336_110 0.1009806797 - - Uracil phosphoribosyltransferase, putative [Ricinus communis]
10 Hb_002997_160 0.1014529815 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X2 [Jatropha curcas]
11 Hb_000023_320 0.1036766939 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000926_010 0.1043429144 - - PREDICTED: uncharacterized protein LOC105632975 [Jatropha curcas]
13 Hb_000227_310 0.1072395996 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
14 Hb_000317_060 0.1090919335 - - PREDICTED: uncharacterized protein LOC105647051 [Jatropha curcas]
15 Hb_007576_220 0.1099077652 - - PREDICTED: kanadaptin [Jatropha curcas]
16 Hb_000116_510 0.1118504598 - - PREDICTED: RNA-binding protein 24-A-like isoform X2 [Jatropha curcas]
17 Hb_002739_130 0.1126513795 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Populus euphratica]
18 Hb_000264_080 0.1127164798 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
19 Hb_011918_050 0.113506444 - - -
20 Hb_001231_030 0.1137149583 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]

Gene co-expression network

sample Hb_003430_030 Hb_003430_030 Hb_005054_190 Hb_005054_190 Hb_003430_030--Hb_005054_190 Hb_000363_280 Hb_000363_280 Hb_003430_030--Hb_000363_280 Hb_005610_080 Hb_005610_080 Hb_003430_030--Hb_005610_080 Hb_000024_120 Hb_000024_120 Hb_003430_030--Hb_000024_120 Hb_000120_420 Hb_000120_420 Hb_003430_030--Hb_000120_420 Hb_000345_490 Hb_000345_490 Hb_003430_030--Hb_000345_490 Hb_005054_190--Hb_000024_120 Hb_005054_190--Hb_000363_280 Hb_005054_190--Hb_005610_080 Hb_005054_190--Hb_000345_490 Hb_011918_050 Hb_011918_050 Hb_005054_190--Hb_011918_050 Hb_011909_060 Hb_011909_060 Hb_000363_280--Hb_011909_060 Hb_000363_280--Hb_000120_420 Hb_000336_110 Hb_000336_110 Hb_000363_280--Hb_000336_110 Hb_000264_080 Hb_000264_080 Hb_000363_280--Hb_000264_080 Hb_006132_040 Hb_006132_040 Hb_005610_080--Hb_006132_040 Hb_005610_080--Hb_000024_120 Hb_005610_080--Hb_000345_490 Hb_000890_010 Hb_000890_010 Hb_005610_080--Hb_000890_010 Hb_000024_120--Hb_000345_490 Hb_009449_090 Hb_009449_090 Hb_000024_120--Hb_009449_090 Hb_000116_510 Hb_000116_510 Hb_000024_120--Hb_000116_510 Hb_000120_420--Hb_011909_060 Hb_000227_310 Hb_000227_310 Hb_000120_420--Hb_000227_310 Hb_000120_420--Hb_000264_080 Hb_167381_020 Hb_167381_020 Hb_000120_420--Hb_167381_020 Hb_002902_020 Hb_002902_020 Hb_000345_490--Hb_002902_020 Hb_001454_220 Hb_001454_220 Hb_000345_490--Hb_001454_220 Hb_000625_120 Hb_000625_120 Hb_000345_490--Hb_000625_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.9811 74.7625 54.2188 15.5354 41.9643 36.01
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.1053 9.7631 8.54524 24.3011 18.7

CAGE analysis