Hb_005054_190

Information

Type -
Description -
Location Contig5054: 134782-140235
Sequence    

Annotation

kegg
ID rcu:RCOM_0591290
description hypothetical protein
nr
ID XP_012087908.1
description PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SLI3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0591290 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46070: 134783-140167 , PASA_asmbl_46072: 136282-140167
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005054_190 0.0 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
2 Hb_003430_030 0.0651737891 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
3 Hb_000024_120 0.0789204359 - - PREDICTED: uncharacterized protein LOC105122546 isoform X1 [Populus euphratica]
4 Hb_000363_280 0.0805271143 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: angiomotin [Cucumis sativus]
5 Hb_005610_080 0.0845545495 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000345_490 0.0912094241 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
7 Hb_011918_050 0.0924454651 - - -
8 Hb_000926_010 0.0973679038 - - PREDICTED: uncharacterized protein LOC105632975 [Jatropha curcas]
9 Hb_008165_030 0.0979256886 - - PREDICTED: uncharacterized protein LOC105641288 [Jatropha curcas]
10 Hb_002902_020 0.0981745238 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
11 Hb_000023_320 0.0992412964 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001231_030 0.1017844825 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
13 Hb_002997_160 0.1032815656 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X2 [Jatropha curcas]
14 Hb_001674_040 0.1038323307 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 23 [Jatropha curcas]
15 Hb_009449_090 0.1050694673 - - PREDICTED: RNA-binding protein 25 isoform X1 [Jatropha curcas]
16 Hb_000317_060 0.1065789632 - - PREDICTED: uncharacterized protein LOC105647051 [Jatropha curcas]
17 Hb_001269_200 0.106596804 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
18 Hb_007576_220 0.1068249194 - - PREDICTED: kanadaptin [Jatropha curcas]
19 Hb_002739_130 0.1080510546 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Populus euphratica]
20 Hb_011920_020 0.1102438043 - - PREDICTED: uncharacterized protein LOC105645397 [Jatropha curcas]

Gene co-expression network

sample Hb_005054_190 Hb_005054_190 Hb_003430_030 Hb_003430_030 Hb_005054_190--Hb_003430_030 Hb_000024_120 Hb_000024_120 Hb_005054_190--Hb_000024_120 Hb_000363_280 Hb_000363_280 Hb_005054_190--Hb_000363_280 Hb_005610_080 Hb_005610_080 Hb_005054_190--Hb_005610_080 Hb_000345_490 Hb_000345_490 Hb_005054_190--Hb_000345_490 Hb_011918_050 Hb_011918_050 Hb_005054_190--Hb_011918_050 Hb_003430_030--Hb_000363_280 Hb_003430_030--Hb_005610_080 Hb_003430_030--Hb_000024_120 Hb_000120_420 Hb_000120_420 Hb_003430_030--Hb_000120_420 Hb_003430_030--Hb_000345_490 Hb_000024_120--Hb_000345_490 Hb_000024_120--Hb_005610_080 Hb_009449_090 Hb_009449_090 Hb_000024_120--Hb_009449_090 Hb_000116_510 Hb_000116_510 Hb_000024_120--Hb_000116_510 Hb_011909_060 Hb_011909_060 Hb_000363_280--Hb_011909_060 Hb_000363_280--Hb_000120_420 Hb_000336_110 Hb_000336_110 Hb_000363_280--Hb_000336_110 Hb_000264_080 Hb_000264_080 Hb_000363_280--Hb_000264_080 Hb_006132_040 Hb_006132_040 Hb_005610_080--Hb_006132_040 Hb_005610_080--Hb_000345_490 Hb_000890_010 Hb_000890_010 Hb_005610_080--Hb_000890_010 Hb_002902_020 Hb_002902_020 Hb_000345_490--Hb_002902_020 Hb_001454_220 Hb_001454_220 Hb_000345_490--Hb_001454_220 Hb_000625_120 Hb_000625_120 Hb_000345_490--Hb_000625_120 Hb_016734_090 Hb_016734_090 Hb_011918_050--Hb_016734_090 Hb_002739_130 Hb_002739_130 Hb_011918_050--Hb_002739_130 Hb_001269_200 Hb_001269_200 Hb_011918_050--Hb_001269_200 Hb_000023_320 Hb_000023_320 Hb_011918_050--Hb_000023_320 Hb_005288_080 Hb_005288_080 Hb_011918_050--Hb_005288_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
87.7366 111.776 93.1067 30.3618 59.257 62.5406
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.7266 17.5111 19.9503 34.1807 41.7828

CAGE analysis