Hb_016734_090

Information

Type -
Description -
Location Contig16734: 74554-80836
Sequence    

Annotation

kegg
ID rcu:RCOM_0536080
description Protein MSP1, putative (EC:3.6.4.3)
nr
ID XP_012076141.1
description PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
swissprot
ID Q20748
description ATPase family AAA domain-containing protein 3 OS=Caenorhabditis elegans GN=atad-3 PE=3 SV=2
trembl
ID A0A067KDU5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12805 PE=3 SV=1
Gene Ontology
ID GO:0005524
description atpase family aaa domain-containing protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15479: 74564-75874 , PASA_asmbl_15480: 77356-77516 , PASA_asmbl_15481: 76185-79096 , PASA_asmbl_15482: 79281-80162 , PASA_asmbl_15483: 80690-80879
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016734_090 0.0 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
2 Hb_002739_130 0.0588704033 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Populus euphratica]
3 Hb_011918_050 0.0753564629 - - -
4 Hb_006452_160 0.0765420423 - - structural constituent of ribosome, putative [Ricinus communis]
5 Hb_001269_200 0.0794784279 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
6 Hb_000563_330 0.0805811373 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
7 Hb_000661_020 0.0821170386 - - BnaC08g27190D [Brassica napus]
8 Hb_002092_100 0.0847390054 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
9 Hb_000156_160 0.0875030255 - - PREDICTED: urease accessory protein G [Jatropha curcas]
10 Hb_039605_010 0.0884952058 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
11 Hb_004631_190 0.0942570794 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
12 Hb_000077_010 0.0953454151 - - unnamed protein product [Vitis vinifera]
13 Hb_005288_080 0.1007026981 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004079_120 0.1011559349 - - PREDICTED: splicing factor, arginine/serine-rich 19 [Jatropha curcas]
15 Hb_001163_120 0.1014067885 - - WD-repeat protein, putative [Ricinus communis]
16 Hb_000173_150 0.1022974366 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
17 Hb_000922_020 0.1031628967 - - protein binding protein, putative [Ricinus communis]
18 Hb_002928_010 0.1044360524 - - PREDICTED: WD repeat-containing protein DWA2 [Jatropha curcas]
19 Hb_001405_190 0.1056303293 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
20 Hb_000525_100 0.1075028794 - - PREDICTED: protease Do-like 9 [Jatropha curcas]

Gene co-expression network

sample Hb_016734_090 Hb_016734_090 Hb_002739_130 Hb_002739_130 Hb_016734_090--Hb_002739_130 Hb_011918_050 Hb_011918_050 Hb_016734_090--Hb_011918_050 Hb_006452_160 Hb_006452_160 Hb_016734_090--Hb_006452_160 Hb_001269_200 Hb_001269_200 Hb_016734_090--Hb_001269_200 Hb_000563_330 Hb_000563_330 Hb_016734_090--Hb_000563_330 Hb_000661_020 Hb_000661_020 Hb_016734_090--Hb_000661_020 Hb_002739_130--Hb_006452_160 Hb_002739_130--Hb_000563_330 Hb_002739_130--Hb_000661_020 Hb_002739_130--Hb_011918_050 Hb_000679_340 Hb_000679_340 Hb_002739_130--Hb_000679_340 Hb_011918_050--Hb_001269_200 Hb_000023_320 Hb_000023_320 Hb_011918_050--Hb_000023_320 Hb_005288_080 Hb_005288_080 Hb_011918_050--Hb_005288_080 Hb_005054_190 Hb_005054_190 Hb_011918_050--Hb_005054_190 Hb_006452_160--Hb_000563_330 Hb_002045_150 Hb_002045_150 Hb_006452_160--Hb_002045_150 Hb_005188_060 Hb_005188_060 Hb_006452_160--Hb_005188_060 Hb_000140_330 Hb_000140_330 Hb_006452_160--Hb_000140_330 Hb_001269_200--Hb_000563_330 Hb_039605_010 Hb_039605_010 Hb_001269_200--Hb_039605_010 Hb_001269_200--Hb_002739_130 Hb_001269_200--Hb_006452_160 Hb_003994_140 Hb_003994_140 Hb_000563_330--Hb_003994_140 Hb_000563_330--Hb_039605_010 Hb_058551_010 Hb_058551_010 Hb_000563_330--Hb_058551_010 Hb_003929_140 Hb_003929_140 Hb_000661_020--Hb_003929_140 Hb_004631_190 Hb_004631_190 Hb_000661_020--Hb_004631_190 Hb_000922_020 Hb_000922_020 Hb_000661_020--Hb_000922_020 Hb_007929_080 Hb_007929_080 Hb_000661_020--Hb_007929_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.6587 13.8774 20.2766 7.91183 18.3594 15.1141
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.10516 5.6529 3.35924 5.96537 7.7123

CAGE analysis