Hb_003929_140

Information

Type -
Description -
Location Contig3929: 79822-84233
Sequence    

Annotation

kegg
ID rcu:RCOM_1003620
description DNA binding protein, putative
nr
ID XP_002519322.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S003
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1003620 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39356: 81978-84097
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003929_140 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_000661_020 0.0646130366 - - BnaC08g27190D [Brassica napus]
3 Hb_002022_070 0.0698313839 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
4 Hb_000028_510 0.0711974137 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
5 Hb_004629_010 0.0728629167 - - PREDICTED: AP-3 complex subunit delta [Jatropha curcas]
6 Hb_000753_100 0.079625312 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105640677 isoform X1 [Jatropha curcas]
7 Hb_001231_030 0.0798686275 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
8 Hb_147505_010 0.080287564 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
9 Hb_006787_060 0.0836781789 - - PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Jatropha curcas]
10 Hb_001021_200 0.0845162616 desease resistance Gene Name: AAA PREDICTED: peroxisome biogenesis protein 6 [Jatropha curcas]
11 Hb_105641_010 0.0861729073 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
12 Hb_003633_070 0.0866961435 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
13 Hb_005188_060 0.0869051482 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
14 Hb_009112_010 0.08878157 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
15 Hb_007929_080 0.089075083 - - PREDICTED: transforming growth factor-beta receptor-associated protein 1 [Jatropha curcas]
16 Hb_000577_030 0.0900697457 - - Ubiquitin carboxyl-terminal hydrolase 12 -like protein [Gossypium arboreum]
17 Hb_000345_150 0.0913594646 - - PREDICTED: uncharacterized protein LOC105647517 isoform X1 [Jatropha curcas]
18 Hb_002571_030 0.092222325 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
19 Hb_004631_190 0.0930118387 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
20 Hb_001143_250 0.0931565179 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003929_140 Hb_003929_140 Hb_000661_020 Hb_000661_020 Hb_003929_140--Hb_000661_020 Hb_002022_070 Hb_002022_070 Hb_003929_140--Hb_002022_070 Hb_000028_510 Hb_000028_510 Hb_003929_140--Hb_000028_510 Hb_004629_010 Hb_004629_010 Hb_003929_140--Hb_004629_010 Hb_000753_100 Hb_000753_100 Hb_003929_140--Hb_000753_100 Hb_001231_030 Hb_001231_030 Hb_003929_140--Hb_001231_030 Hb_004631_190 Hb_004631_190 Hb_000661_020--Hb_004631_190 Hb_002739_130 Hb_002739_130 Hb_000661_020--Hb_002739_130 Hb_016734_090 Hb_016734_090 Hb_000661_020--Hb_016734_090 Hb_000922_020 Hb_000922_020 Hb_000661_020--Hb_000922_020 Hb_007929_080 Hb_007929_080 Hb_000661_020--Hb_007929_080 Hb_000960_100 Hb_000960_100 Hb_002022_070--Hb_000960_100 Hb_000025_320 Hb_000025_320 Hb_002022_070--Hb_000025_320 Hb_004884_010 Hb_004884_010 Hb_002022_070--Hb_004884_010 Hb_001021_200 Hb_001021_200 Hb_002022_070--Hb_001021_200 Hb_004108_100 Hb_004108_100 Hb_002022_070--Hb_004108_100 Hb_002022_070--Hb_000028_510 Hb_000028_510--Hb_001021_200 Hb_002267_140 Hb_002267_140 Hb_000028_510--Hb_002267_140 Hb_000028_510--Hb_004629_010 Hb_002615_090 Hb_002615_090 Hb_000028_510--Hb_002615_090 Hb_009112_010 Hb_009112_010 Hb_004629_010--Hb_009112_010 Hb_006787_060 Hb_006787_060 Hb_004629_010--Hb_006787_060 Hb_000120_660 Hb_000120_660 Hb_004629_010--Hb_000120_660 Hb_002392_030 Hb_002392_030 Hb_004629_010--Hb_002392_030 Hb_005104_010 Hb_005104_010 Hb_004629_010--Hb_005104_010 Hb_000032_010 Hb_000032_010 Hb_000753_100--Hb_000032_010 Hb_003540_160 Hb_003540_160 Hb_000753_100--Hb_003540_160 Hb_003040_020 Hb_003040_020 Hb_000753_100--Hb_003040_020 Hb_001117_190 Hb_001117_190 Hb_000753_100--Hb_001117_190 Hb_140049_020 Hb_140049_020 Hb_000753_100--Hb_140049_020 Hb_005188_060 Hb_005188_060 Hb_000753_100--Hb_005188_060 Hb_001231_030--Hb_006787_060 Hb_002902_020 Hb_002902_020 Hb_001231_030--Hb_002902_020 Hb_001231_030--Hb_004629_010 Hb_002997_160 Hb_002997_160 Hb_001231_030--Hb_002997_160 Hb_001231_030--Hb_005104_010 Hb_001231_030--Hb_000753_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.4514 17.7183 12.5731 6.28809 15.5766 13.2548
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.21208 3.78817 8.14218 6.81668 9.57711

CAGE analysis