Hb_003540_160

Information

Type -
Description -
Location Contig3540: 103358-108392
Sequence    

Annotation

kegg
ID pop:POPTR_0011s12160g
description hypothetical protein
nr
ID XP_002316904.1
description hypothetical protein POPTR_0011s12160g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HZW1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s12160g PE=4 SV=1
Gene Ontology
ID GO:0008284
description rna-binding protein 25

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36709: 103345-108473
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003540_160 0.0 - - hypothetical protein POPTR_0011s12160g [Populus trichocarpa]
2 Hb_000317_150 0.0434878443 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
3 Hb_001117_190 0.0566820786 transcription factor TF Family: FAR1 FAR1-related sequence 11 [Theobroma cacao]
4 Hb_005539_190 0.0629716929 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
5 Hb_140049_020 0.0647802539 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
6 Hb_000753_100 0.0665667369 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105640677 isoform X1 [Jatropha curcas]
7 Hb_007943_120 0.0784101864 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X4 [Jatropha curcas]
8 Hb_000313_340 0.0801485366 - - DNA repair protein xp-E, putative [Ricinus communis]
9 Hb_007229_040 0.0803227294 - - PREDICTED: protein ARABIDILLO 1-like [Jatropha curcas]
10 Hb_028872_120 0.0818246877 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
11 Hb_019153_020 0.081935156 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
12 Hb_002675_040 0.0821930569 - - ran-binding protein, putative [Ricinus communis]
13 Hb_005188_060 0.0823644642 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
14 Hb_004635_050 0.0828208933 - - nucleolar phosphoprotein, putative [Ricinus communis]
15 Hb_001946_240 0.0836078012 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
16 Hb_000032_010 0.083833577 - - crooked neck protein, putative [Ricinus communis]
17 Hb_004429_160 0.0875877668 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
18 Hb_002301_270 0.0891336262 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
19 Hb_000953_030 0.0898075124 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
20 Hb_002659_060 0.0899326419 - - PREDICTED: SWI/SNF complex subunit SWI3B [Jatropha curcas]

Gene co-expression network

sample Hb_003540_160 Hb_003540_160 Hb_000317_150 Hb_000317_150 Hb_003540_160--Hb_000317_150 Hb_001117_190 Hb_001117_190 Hb_003540_160--Hb_001117_190 Hb_005539_190 Hb_005539_190 Hb_003540_160--Hb_005539_190 Hb_140049_020 Hb_140049_020 Hb_003540_160--Hb_140049_020 Hb_000753_100 Hb_000753_100 Hb_003540_160--Hb_000753_100 Hb_007943_120 Hb_007943_120 Hb_003540_160--Hb_007943_120 Hb_000317_150--Hb_001117_190 Hb_000317_150--Hb_140049_020 Hb_000317_150--Hb_000753_100 Hb_000317_150--Hb_005539_190 Hb_000313_340 Hb_000313_340 Hb_000317_150--Hb_000313_340 Hb_007229_040 Hb_007229_040 Hb_001117_190--Hb_007229_040 Hb_001117_190--Hb_000753_100 Hb_001117_190--Hb_005539_190 Hb_005188_060 Hb_005188_060 Hb_001117_190--Hb_005188_060 Hb_005539_190--Hb_140049_020 Hb_003040_020 Hb_003040_020 Hb_005539_190--Hb_003040_020 Hb_000032_010 Hb_000032_010 Hb_005539_190--Hb_000032_010 Hb_019153_020 Hb_019153_020 Hb_005539_190--Hb_019153_020 Hb_140049_030 Hb_140049_030 Hb_005539_190--Hb_140049_030 Hb_140049_020--Hb_000313_340 Hb_140049_020--Hb_019153_020 Hb_000329_130 Hb_000329_130 Hb_140049_020--Hb_000329_130 Hb_140049_020--Hb_007229_040 Hb_000363_130 Hb_000363_130 Hb_140049_020--Hb_000363_130 Hb_000753_100--Hb_000032_010 Hb_000753_100--Hb_003040_020 Hb_000753_100--Hb_140049_020 Hb_000753_100--Hb_005188_060 Hb_007943_120--Hb_005188_060 Hb_028872_120 Hb_028872_120 Hb_007943_120--Hb_028872_120 Hb_005883_010 Hb_005883_010 Hb_007943_120--Hb_005883_010 Hb_001771_120 Hb_001771_120 Hb_007943_120--Hb_001771_120 Hb_004635_050 Hb_004635_050 Hb_007943_120--Hb_004635_050 Hb_003680_230 Hb_003680_230 Hb_007943_120--Hb_003680_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
85.8849 71.2154 41.3604 17.8004 93.4931 60.818
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.116 15.7961 21.1997 32.9876 27.1604

CAGE analysis