Hb_000317_150

Information

Type -
Description -
Location Contig317: 96341-104297
Sequence    

Annotation

kegg
ID bvg:104901272
description uncharacterized LOC104901272
nr
ID XP_010687126.1
description PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID B9RW76
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1176530 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33365: 103344-103689 , PASA_asmbl_33366: 103695-104397
cDNA
(Sanger)
(ID:Location)		 001_B19.ab1: 103695-104330 , 002_H12.ab1: 103695-104330 , 008_M15.ab1: 103829-104397 , 027_M13.ab1: 104116-104330 , 031_E06.ab1: 103696-104319 , 033_L13.ab1: 103753-104330 , 044_H11.ab1: 103767-104305 , 047_K05.ab1: 103696-104317 , 048_K23.ab1: 103753-104330 , 049_C07.ab1: 103838-104397

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_150 0.0 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
2 Hb_003540_160 0.0434878443 - - hypothetical protein POPTR_0011s12160g [Populus trichocarpa]
3 Hb_001117_190 0.0633321318 transcription factor TF Family: FAR1 FAR1-related sequence 11 [Theobroma cacao]
4 Hb_140049_020 0.0841105791 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
5 Hb_000753_100 0.0850569836 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105640677 isoform X1 [Jatropha curcas]
6 Hb_005539_190 0.0857624393 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
7 Hb_000313_340 0.0893809372 - - DNA repair protein xp-E, putative [Ricinus communis]
8 Hb_001946_240 0.0928652094 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
9 Hb_009558_040 0.0968537604 transcription factor TF Family: MYB hypothetical protein PHAVU_008G102000g [Phaseolus vulgaris]
10 Hb_019153_020 0.0972377745 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
11 Hb_043668_010 0.097432912 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_007229_040 0.0999987597 - - PREDICTED: protein ARABIDILLO 1-like [Jatropha curcas]
13 Hb_005188_060 0.1013308599 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
14 Hb_000032_010 0.1019104202 - - crooked neck protein, putative [Ricinus communis]
15 Hb_000953_030 0.1023024159 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
16 Hb_002675_040 0.1023581366 - - ran-binding protein, putative [Ricinus communis]
17 Hb_007943_120 0.1035686147 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X4 [Jatropha curcas]
18 Hb_002301_270 0.1047823176 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
19 Hb_007885_070 0.1056324886 - - cleavage and polyadenylation specificity factor, putative [Ricinus communis]
20 Hb_028872_120 0.1057130049 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]

Gene co-expression network

sample Hb_000317_150 Hb_000317_150 Hb_003540_160 Hb_003540_160 Hb_000317_150--Hb_003540_160 Hb_001117_190 Hb_001117_190 Hb_000317_150--Hb_001117_190 Hb_140049_020 Hb_140049_020 Hb_000317_150--Hb_140049_020 Hb_000753_100 Hb_000753_100 Hb_000317_150--Hb_000753_100 Hb_005539_190 Hb_005539_190 Hb_000317_150--Hb_005539_190 Hb_000313_340 Hb_000313_340 Hb_000317_150--Hb_000313_340 Hb_003540_160--Hb_001117_190 Hb_003540_160--Hb_005539_190 Hb_003540_160--Hb_140049_020 Hb_003540_160--Hb_000753_100 Hb_007943_120 Hb_007943_120 Hb_003540_160--Hb_007943_120 Hb_007229_040 Hb_007229_040 Hb_001117_190--Hb_007229_040 Hb_001117_190--Hb_000753_100 Hb_001117_190--Hb_005539_190 Hb_005188_060 Hb_005188_060 Hb_001117_190--Hb_005188_060 Hb_140049_020--Hb_000313_340 Hb_019153_020 Hb_019153_020 Hb_140049_020--Hb_019153_020 Hb_140049_020--Hb_005539_190 Hb_000329_130 Hb_000329_130 Hb_140049_020--Hb_000329_130 Hb_140049_020--Hb_007229_040 Hb_000363_130 Hb_000363_130 Hb_140049_020--Hb_000363_130 Hb_000032_010 Hb_000032_010 Hb_000753_100--Hb_000032_010 Hb_003040_020 Hb_003040_020 Hb_000753_100--Hb_003040_020 Hb_000753_100--Hb_140049_020 Hb_000753_100--Hb_005188_060 Hb_005539_190--Hb_003040_020 Hb_005539_190--Hb_000032_010 Hb_005539_190--Hb_019153_020 Hb_140049_030 Hb_140049_030 Hb_005539_190--Hb_140049_030 Hb_001946_300 Hb_001946_300 Hb_000313_340--Hb_001946_300 Hb_007885_070 Hb_007885_070 Hb_000313_340--Hb_007885_070 Hb_004899_070 Hb_004899_070 Hb_000313_340--Hb_004899_070 Hb_000261_290 Hb_000261_290 Hb_000313_340--Hb_000261_290 Hb_000313_340--Hb_000363_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.3528 9.82378 4.83296 1.857 13.2551 7.29982
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.56918 2.31022 2.98751 3.86305 3.73478

CAGE analysis