Hb_007943_120

Information

Type transcription factor
Description TF Family: CPP
Location Contig7943: 99735-112306
Sequence    

Annotation

kegg
ID rcu:RCOM_1052210
description transcription factor, putative
nr
ID XP_012076725.1
description PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X4 [Jatropha curcas]
swissprot
ID Q9SZD1
description Protein tesmin/TSO1-like CXC 5 OS=Arabidopsis thaliana GN=TCX5 PE=1 SV=1
trembl
ID A0A067KPI7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07265 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58474: 99486-99688 , PASA_asmbl_58475: 112298-112844
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007943_120 0.0 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X4 [Jatropha curcas]
2 Hb_005188_060 0.0465275445 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
3 Hb_028872_120 0.0544343552 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
4 Hb_005883_010 0.0546342981 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001771_120 0.0573769557 - - K+ transport growth defect-like protein [Hevea brasiliensis]
6 Hb_004635_050 0.0605076141 - - nucleolar phosphoprotein, putative [Ricinus communis]
7 Hb_003680_230 0.068516814 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
8 Hb_007558_120 0.0717776729 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
9 Hb_007229_040 0.0723921902 - - PREDICTED: protein ARABIDILLO 1-like [Jatropha curcas]
10 Hb_000140_330 0.0728714097 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]
11 Hb_000329_130 0.0748043553 - - beta-tubulin cofactor d, putative [Ricinus communis]
12 Hb_003540_160 0.0784101864 - - hypothetical protein POPTR_0011s12160g [Populus trichocarpa]
13 Hb_000320_380 0.0792614084 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
14 Hb_002221_050 0.0814697011 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
15 Hb_002301_270 0.0821514664 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
16 Hb_006452_160 0.0825328836 - - structural constituent of ribosome, putative [Ricinus communis]
17 Hb_000300_360 0.0832947853 - - PREDICTED: exosome component 10 [Jatropha curcas]
18 Hb_000368_020 0.0836937219 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
19 Hb_140049_020 0.0837452182 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
20 Hb_000406_240 0.0852019192 - - PREDICTED: double-stranded RNA-binding protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_007943_120 Hb_007943_120 Hb_005188_060 Hb_005188_060 Hb_007943_120--Hb_005188_060 Hb_028872_120 Hb_028872_120 Hb_007943_120--Hb_028872_120 Hb_005883_010 Hb_005883_010 Hb_007943_120--Hb_005883_010 Hb_001771_120 Hb_001771_120 Hb_007943_120--Hb_001771_120 Hb_004635_050 Hb_004635_050 Hb_007943_120--Hb_004635_050 Hb_003680_230 Hb_003680_230 Hb_007943_120--Hb_003680_230 Hb_005188_060--Hb_005883_010 Hb_005188_060--Hb_003680_230 Hb_000140_330 Hb_000140_330 Hb_005188_060--Hb_000140_330 Hb_007229_040 Hb_007229_040 Hb_005188_060--Hb_007229_040 Hb_005188_060--Hb_004635_050 Hb_000329_130 Hb_000329_130 Hb_028872_120--Hb_000329_130 Hb_017895_020 Hb_017895_020 Hb_028872_120--Hb_017895_020 Hb_002301_270 Hb_002301_270 Hb_028872_120--Hb_002301_270 Hb_001178_150 Hb_001178_150 Hb_028872_120--Hb_001178_150 Hb_010315_090 Hb_010315_090 Hb_028872_120--Hb_010315_090 Hb_000283_130 Hb_000283_130 Hb_005883_010--Hb_000283_130 Hb_010738_010 Hb_010738_010 Hb_005883_010--Hb_010738_010 Hb_005883_010--Hb_000140_330 Hb_005883_010--Hb_007229_040 Hb_002221_050 Hb_002221_050 Hb_001771_120--Hb_002221_050 Hb_001771_120--Hb_000329_130 Hb_000424_010 Hb_000424_010 Hb_001771_120--Hb_000424_010 Hb_009151_020 Hb_009151_020 Hb_001771_120--Hb_009151_020 Hb_002477_130 Hb_002477_130 Hb_001771_120--Hb_002477_130 Hb_007558_120 Hb_007558_120 Hb_004635_050--Hb_007558_120 Hb_033883_060 Hb_033883_060 Hb_004635_050--Hb_033883_060 Hb_003777_160 Hb_003777_160 Hb_004635_050--Hb_003777_160 Hb_004635_050--Hb_005883_010 Hb_019153_020 Hb_019153_020 Hb_004635_050--Hb_019153_020 Hb_003680_230--Hb_007558_120 Hb_000116_060 Hb_000116_060 Hb_003680_230--Hb_000116_060 Hb_006816_050 Hb_006816_050 Hb_003680_230--Hb_006816_050 Hb_002942_050 Hb_002942_050 Hb_003680_230--Hb_002942_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.55021 5.44173 4.08009 1.85865 6.9901 5.82891
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.12187 1.97338 2.2988 2.00765 2.51672

CAGE analysis