Hb_004635_050

Information

Type -
Description -
Location Contig4635: 38917-42838
Sequence    

Annotation

kegg
ID rcu:RCOM_0292800
description nucleolar phosphoprotein, putative
nr
ID XP_002530322.1
description nucleolar phosphoprotein, putative [Ricinus communis]
swissprot
ID Q09511
description Probable splicing factor, arginine/serine-rich 4 OS=Caenorhabditis elegans GN=rsp-4 PE=3 SV=1
trembl
ID B9SWF3
description Nucleolar phosphoprotein, putative OS=Ricinus communis GN=RCOM_0292800 PE=4 SV=1
Gene Ontology
ID GO:0000166
description heterogeneous nuclear ribonucleoprotein r-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43884: 37905-40457 , PASA_asmbl_43885: 41517-42823
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004635_050 0.0 - - nucleolar phosphoprotein, putative [Ricinus communis]
2 Hb_007943_120 0.0605076141 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X4 [Jatropha curcas]
3 Hb_007558_120 0.0631785466 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
4 Hb_033883_060 0.0644870615 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]
5 Hb_003777_160 0.0647540626 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
6 Hb_005883_010 0.0698418203 - - conserved hypothetical protein [Ricinus communis]
7 Hb_019153_020 0.0708872353 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
8 Hb_003680_230 0.0732165003 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
9 Hb_000032_010 0.0735705756 - - crooked neck protein, putative [Ricinus communis]
10 Hb_005188_060 0.074036407 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
11 Hb_000406_240 0.0747000441 - - PREDICTED: double-stranded RNA-binding protein 2-like [Jatropha curcas]
12 Hb_002659_060 0.0785591276 - - PREDICTED: SWI/SNF complex subunit SWI3B [Jatropha curcas]
13 Hb_000300_360 0.0787531596 - - PREDICTED: exosome component 10 [Jatropha curcas]
14 Hb_000753_100 0.0794190685 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105640677 isoform X1 [Jatropha curcas]
15 Hb_004429_160 0.0796284169 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
16 Hb_003040_020 0.0800207966 - - PREDICTED: protein cereblon [Jatropha curcas]
17 Hb_002221_050 0.0801923012 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
18 Hb_000152_340 0.0818880074 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
19 Hb_006816_050 0.0819245332 - - PREDICTED: RNA polymerase II-associated protein 3 isoform X4 [Jatropha curcas]
20 Hb_000953_030 0.0824156836 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004635_050 Hb_004635_050 Hb_007943_120 Hb_007943_120 Hb_004635_050--Hb_007943_120 Hb_007558_120 Hb_007558_120 Hb_004635_050--Hb_007558_120 Hb_033883_060 Hb_033883_060 Hb_004635_050--Hb_033883_060 Hb_003777_160 Hb_003777_160 Hb_004635_050--Hb_003777_160 Hb_005883_010 Hb_005883_010 Hb_004635_050--Hb_005883_010 Hb_019153_020 Hb_019153_020 Hb_004635_050--Hb_019153_020 Hb_005188_060 Hb_005188_060 Hb_007943_120--Hb_005188_060 Hb_028872_120 Hb_028872_120 Hb_007943_120--Hb_028872_120 Hb_007943_120--Hb_005883_010 Hb_001771_120 Hb_001771_120 Hb_007943_120--Hb_001771_120 Hb_003680_230 Hb_003680_230 Hb_007943_120--Hb_003680_230 Hb_000796_190 Hb_000796_190 Hb_007558_120--Hb_000796_190 Hb_007558_120--Hb_003680_230 Hb_000329_130 Hb_000329_130 Hb_007558_120--Hb_000329_130 Hb_006816_050 Hb_006816_050 Hb_007558_120--Hb_006816_050 Hb_002042_140 Hb_002042_140 Hb_007558_120--Hb_002042_140 Hb_031042_070 Hb_031042_070 Hb_033883_060--Hb_031042_070 Hb_001633_040 Hb_001633_040 Hb_033883_060--Hb_001633_040 Hb_017075_030 Hb_017075_030 Hb_033883_060--Hb_017075_030 Hb_004920_130 Hb_004920_130 Hb_033883_060--Hb_004920_130 Hb_002659_060 Hb_002659_060 Hb_033883_060--Hb_002659_060 Hb_003777_160--Hb_019153_020 Hb_000032_010 Hb_000032_010 Hb_003777_160--Hb_000032_010 Hb_003777_160--Hb_033883_060 Hb_000529_260 Hb_000529_260 Hb_003777_160--Hb_000529_260 Hb_002221_050 Hb_002221_050 Hb_003777_160--Hb_002221_050 Hb_005883_010--Hb_005188_060 Hb_000283_130 Hb_000283_130 Hb_005883_010--Hb_000283_130 Hb_010738_010 Hb_010738_010 Hb_005883_010--Hb_010738_010 Hb_000140_330 Hb_000140_330 Hb_005883_010--Hb_000140_330 Hb_007229_040 Hb_007229_040 Hb_005883_010--Hb_007229_040 Hb_019153_020--Hb_000032_010 Hb_140049_020 Hb_140049_020 Hb_019153_020--Hb_140049_020 Hb_000417_160 Hb_000417_160 Hb_019153_020--Hb_000417_160 Hb_019153_020--Hb_002221_050 Hb_019153_020--Hb_000529_260 Hb_010315_090 Hb_010315_090 Hb_019153_020--Hb_010315_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.82353 8.96715 4.91192 3.29668 10.3404 7.27986
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.65242 2.60602 3.55179 3.99736 3.20427

CAGE analysis