Hb_001117_190

Information

Type transcription factor
Description TF Family: FAR1
Location Contig1117: 144298-155979
Sequence    

Annotation

kegg
ID tcc:TCM_041141
description FAR1-related sequence 11
nr
ID XP_007015540.1
description FAR1-related sequence 11 [Theobroma cacao]
swissprot
ID Q9SY66
description Protein FAR1-RELATED SEQUENCE 11 OS=Arabidopsis thaliana GN=FRS11 PE=2 SV=1
trembl
ID A0A061GZJ8
description FAR1-related sequence 11 OS=Theobroma cacao GN=TCM_041141 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein far1-related sequence 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03549: 145092-146197
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001117_190 0.0 transcription factor TF Family: FAR1 FAR1-related sequence 11 [Theobroma cacao]
2 Hb_003540_160 0.0566820786 - - hypothetical protein POPTR_0011s12160g [Populus trichocarpa]
3 Hb_007229_040 0.0616733438 - - PREDICTED: protein ARABIDILLO 1-like [Jatropha curcas]
4 Hb_000317_150 0.0633321318 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
5 Hb_000753_100 0.0736294854 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105640677 isoform X1 [Jatropha curcas]
6 Hb_005539_190 0.0776788693 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
7 Hb_005188_060 0.0787569592 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
8 Hb_140049_020 0.0807992188 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
9 Hb_002997_160 0.0873113372 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X2 [Jatropha curcas]
10 Hb_007943_120 0.0911005962 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X4 [Jatropha curcas]
11 Hb_000313_340 0.0919955487 - - DNA repair protein xp-E, putative [Ricinus communis]
12 Hb_028872_120 0.0981346208 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
13 Hb_000953_030 0.0987385201 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
14 Hb_005883_010 0.1001036273 - - conserved hypothetical protein [Ricinus communis]
15 Hb_019153_020 0.1013854883 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
16 Hb_000032_010 0.1014705704 - - crooked neck protein, putative [Ricinus communis]
17 Hb_002301_270 0.1035409602 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
18 Hb_080147_040 0.103596795 - - hypothetical protein JCGZ_07266 [Jatropha curcas]
19 Hb_003040_020 0.1042829882 - - PREDICTED: protein cereblon [Jatropha curcas]
20 Hb_000320_380 0.104932666 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001117_190 Hb_001117_190 Hb_003540_160 Hb_003540_160 Hb_001117_190--Hb_003540_160 Hb_007229_040 Hb_007229_040 Hb_001117_190--Hb_007229_040 Hb_000317_150 Hb_000317_150 Hb_001117_190--Hb_000317_150 Hb_000753_100 Hb_000753_100 Hb_001117_190--Hb_000753_100 Hb_005539_190 Hb_005539_190 Hb_001117_190--Hb_005539_190 Hb_005188_060 Hb_005188_060 Hb_001117_190--Hb_005188_060 Hb_003540_160--Hb_000317_150 Hb_003540_160--Hb_005539_190 Hb_140049_020 Hb_140049_020 Hb_003540_160--Hb_140049_020 Hb_003540_160--Hb_000753_100 Hb_007943_120 Hb_007943_120 Hb_003540_160--Hb_007943_120 Hb_007229_040--Hb_140049_020 Hb_005883_010 Hb_005883_010 Hb_007229_040--Hb_005883_010 Hb_000320_380 Hb_000320_380 Hb_007229_040--Hb_000320_380 Hb_007229_040--Hb_005188_060 Hb_007229_040--Hb_007943_120 Hb_000317_150--Hb_140049_020 Hb_000317_150--Hb_000753_100 Hb_000317_150--Hb_005539_190 Hb_000313_340 Hb_000313_340 Hb_000317_150--Hb_000313_340 Hb_000032_010 Hb_000032_010 Hb_000753_100--Hb_000032_010 Hb_003040_020 Hb_003040_020 Hb_000753_100--Hb_003040_020 Hb_000753_100--Hb_140049_020 Hb_000753_100--Hb_005188_060 Hb_005539_190--Hb_140049_020 Hb_005539_190--Hb_003040_020 Hb_005539_190--Hb_000032_010 Hb_019153_020 Hb_019153_020 Hb_005539_190--Hb_019153_020 Hb_140049_030 Hb_140049_030 Hb_005539_190--Hb_140049_030 Hb_005188_060--Hb_007943_120 Hb_005188_060--Hb_005883_010 Hb_003680_230 Hb_003680_230 Hb_005188_060--Hb_003680_230 Hb_000140_330 Hb_000140_330 Hb_005188_060--Hb_000140_330 Hb_004635_050 Hb_004635_050 Hb_005188_060--Hb_004635_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.54168 8.69259 5.6547 1.42349 10.2836 7.27549
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.47185 1.82533 3.10445 3.56664 2.54019

CAGE analysis