Hb_004631_190

Information

Type -
Description -
Location Contig4631: 162345-169657
Sequence    

Annotation

kegg
ID pop:POPTR_0007s05040g
description POPTRDRAFT_764109; hypothetical protein
nr
ID XP_012081621.1
description PREDICTED: protein SCAI homolog [Jatropha curcas]
swissprot
ID Q8N9R8
description Protein SCAI OS=Homo sapiens GN=SCAI PE=1 SV=2
trembl
ID B9HF83
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s05040g PE=4 SV=1
Gene Ontology
ID GO:0003714
description protein scai

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43872: 162255-169616
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004631_190 0.0 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
2 Hb_001405_190 0.0608862336 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
3 Hb_009112_010 0.0684909499 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
4 Hb_000230_430 0.0689490749 - - catalytic, putative [Ricinus communis]
5 Hb_001140_030 0.0699857195 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
6 Hb_000718_070 0.0699906408 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000661_020 0.0747685552 - - BnaC08g27190D [Brassica napus]
8 Hb_003633_070 0.0750385079 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
9 Hb_001077_030 0.0758325412 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]
10 Hb_011310_130 0.0767144397 - - DEAD/DEAH box RNA helicase family protein isoform 1 [Theobroma cacao]
11 Hb_000922_020 0.0767294027 - - protein binding protein, putative [Ricinus communis]
12 Hb_000162_030 0.0768312701 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
13 Hb_005965_030 0.076959815 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
14 Hb_143766_110 0.0775960503 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 1 [Jatropha curcas]
15 Hb_000563_600 0.0782799843 - - PREDICTED: uncharacterized protein LOC104428079 [Eucalyptus grandis]
16 Hb_000679_340 0.0786532238 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
17 Hb_002311_070 0.0790896062 - - PREDICTED: AMSH-like ubiquitin thioesterase 3 [Jatropha curcas]
18 Hb_000023_320 0.0794186304 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000162_280 0.0812278588 - - PREDICTED: CTL-like protein DDB_G0288717 [Populus euphratica]
20 Hb_007929_080 0.0826290865 - - PREDICTED: transforming growth factor-beta receptor-associated protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_004631_190 Hb_004631_190 Hb_001405_190 Hb_001405_190 Hb_004631_190--Hb_001405_190 Hb_009112_010 Hb_009112_010 Hb_004631_190--Hb_009112_010 Hb_000230_430 Hb_000230_430 Hb_004631_190--Hb_000230_430 Hb_001140_030 Hb_001140_030 Hb_004631_190--Hb_001140_030 Hb_000718_070 Hb_000718_070 Hb_004631_190--Hb_000718_070 Hb_000661_020 Hb_000661_020 Hb_004631_190--Hb_000661_020 Hb_002615_120 Hb_002615_120 Hb_001405_190--Hb_002615_120 Hb_143766_110 Hb_143766_110 Hb_001405_190--Hb_143766_110 Hb_007929_080 Hb_007929_080 Hb_001405_190--Hb_007929_080 Hb_000922_020 Hb_000922_020 Hb_001405_190--Hb_000922_020 Hb_010362_030 Hb_010362_030 Hb_001405_190--Hb_010362_030 Hb_000162_280 Hb_000162_280 Hb_009112_010--Hb_000162_280 Hb_003633_070 Hb_003633_070 Hb_009112_010--Hb_003633_070 Hb_004629_010 Hb_004629_010 Hb_009112_010--Hb_004629_010 Hb_000960_050 Hb_000960_050 Hb_009112_010--Hb_000960_050 Hb_008112_030 Hb_008112_030 Hb_009112_010--Hb_008112_030 Hb_006615_120 Hb_006615_120 Hb_009112_010--Hb_006615_120 Hb_001243_060 Hb_001243_060 Hb_000230_430--Hb_001243_060 Hb_002902_020 Hb_002902_020 Hb_000230_430--Hb_002902_020 Hb_000264_070 Hb_000264_070 Hb_000230_430--Hb_000264_070 Hb_009780_100 Hb_009780_100 Hb_000230_430--Hb_009780_100 Hb_118840_050 Hb_118840_050 Hb_000230_430--Hb_118840_050 Hb_001952_120 Hb_001952_120 Hb_001140_030--Hb_001952_120 Hb_010998_040 Hb_010998_040 Hb_001140_030--Hb_010998_040 Hb_032264_060 Hb_032264_060 Hb_001140_030--Hb_032264_060 Hb_005965_030 Hb_005965_030 Hb_001140_030--Hb_005965_030 Hb_001140_030--Hb_001405_190 Hb_001077_030 Hb_001077_030 Hb_000718_070--Hb_001077_030 Hb_002311_070 Hb_002311_070 Hb_000718_070--Hb_002311_070 Hb_003124_220 Hb_003124_220 Hb_000718_070--Hb_003124_220 Hb_003680_230 Hb_003680_230 Hb_000718_070--Hb_003680_230 Hb_000718_070--Hb_001140_030 Hb_003929_140 Hb_003929_140 Hb_000661_020--Hb_003929_140 Hb_002739_130 Hb_002739_130 Hb_000661_020--Hb_002739_130 Hb_016734_090 Hb_016734_090 Hb_000661_020--Hb_016734_090 Hb_000661_020--Hb_000922_020 Hb_000661_020--Hb_007929_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.4138 19.037 19.3806 13.1972 20.1429 16.4987
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.99287 7.51287 8.02191 10.3761 8.70498

CAGE analysis