Hb_003124_220

Information

Type -
Description -
Location Contig3124: 161435-164513
Sequence    

Annotation

kegg
ID rcu:RCOM_0927550
description fidipidine, putative
nr
ID XP_012078635.1
description PREDICTED: coiled-coil domain-containing protein 93 [Jatropha curcas]
swissprot
ID Q567U6
description Coiled-coil domain-containing protein 93 OS=Homo sapiens GN=CCDC93 PE=1 SV=2
trembl
ID A0A067KJ69
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13220 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33033: 160051-164512 , PASA_asmbl_33034: 162936-163301
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003124_220 0.0 - - PREDICTED: coiled-coil domain-containing protein 93 [Jatropha curcas]
2 Hb_000718_070 0.0660164667 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001347_040 0.0660555547 - - PREDICTED: uncharacterized protein LOC105633920 [Jatropha curcas]
4 Hb_002078_110 0.0676971524 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
5 Hb_131646_010 0.0695963664 - - protein arginine n-methyltransferase, putative [Ricinus communis]
6 Hb_143395_010 0.0706022959 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
7 Hb_000256_190 0.0761700653 - - PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Jatropha curcas]
8 Hb_004631_180 0.0785094496 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
9 Hb_000576_020 0.0795461165 - - PREDICTED: uncharacterized protein LOC105638286 [Jatropha curcas]
10 Hb_004785_100 0.0797059148 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007416_300 0.0798629554 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
12 Hb_002686_250 0.081525558 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
13 Hb_000928_220 0.0826715424 - - PREDICTED: protein SCAI [Jatropha curcas]
14 Hb_001077_030 0.082860194 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]
15 Hb_002311_070 0.0831605422 - - PREDICTED: AMSH-like ubiquitin thioesterase 3 [Jatropha curcas]
16 Hb_003029_030 0.0839778497 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
17 Hb_006916_040 0.0860535502 - - 60S ribosomal protein L7a, putative [Ricinus communis]
18 Hb_144166_010 0.0866772016 - - PREDICTED: importin-13 [Jatropha curcas]
19 Hb_000656_250 0.0869343314 - - hypothetical protein JCGZ_24680 [Jatropha curcas]
20 Hb_000116_060 0.0871781966 - - plant ubiquilin, putative [Ricinus communis]

Gene co-expression network

sample Hb_003124_220 Hb_003124_220 Hb_000718_070 Hb_000718_070 Hb_003124_220--Hb_000718_070 Hb_001347_040 Hb_001347_040 Hb_003124_220--Hb_001347_040 Hb_002078_110 Hb_002078_110 Hb_003124_220--Hb_002078_110 Hb_131646_010 Hb_131646_010 Hb_003124_220--Hb_131646_010 Hb_143395_010 Hb_143395_010 Hb_003124_220--Hb_143395_010 Hb_000256_190 Hb_000256_190 Hb_003124_220--Hb_000256_190 Hb_001077_030 Hb_001077_030 Hb_000718_070--Hb_001077_030 Hb_002311_070 Hb_002311_070 Hb_000718_070--Hb_002311_070 Hb_004631_190 Hb_004631_190 Hb_000718_070--Hb_004631_190 Hb_003680_230 Hb_003680_230 Hb_000718_070--Hb_003680_230 Hb_001140_030 Hb_001140_030 Hb_000718_070--Hb_001140_030 Hb_001347_040--Hb_131646_010 Hb_001347_040--Hb_143395_010 Hb_001377_070 Hb_001377_070 Hb_001347_040--Hb_001377_070 Hb_001347_040--Hb_000256_190 Hb_001347_040--Hb_002078_110 Hb_002835_230 Hb_002835_230 Hb_002078_110--Hb_002835_230 Hb_002686_250 Hb_002686_250 Hb_002078_110--Hb_002686_250 Hb_002078_110--Hb_131646_010 Hb_000309_040 Hb_000309_040 Hb_002078_110--Hb_000309_040 Hb_000928_220 Hb_000928_220 Hb_002078_110--Hb_000928_220 Hb_000070_080 Hb_000070_080 Hb_002078_110--Hb_000070_080 Hb_131646_010--Hb_002686_250 Hb_004785_100 Hb_004785_100 Hb_131646_010--Hb_004785_100 Hb_131646_010--Hb_002835_230 Hb_003029_030 Hb_003029_030 Hb_131646_010--Hb_003029_030 Hb_007416_300 Hb_007416_300 Hb_143395_010--Hb_007416_300 Hb_010381_090 Hb_010381_090 Hb_143395_010--Hb_010381_090 Hb_003964_070 Hb_003964_070 Hb_143395_010--Hb_003964_070 Hb_143395_010--Hb_131646_010 Hb_006916_040 Hb_006916_040 Hb_000256_190--Hb_006916_040 Hb_004631_180 Hb_004631_180 Hb_000256_190--Hb_004631_180 Hb_112798_020 Hb_112798_020 Hb_000256_190--Hb_112798_020 Hb_003549_150 Hb_003549_150 Hb_000256_190--Hb_003549_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.5022 21.9712 24.4472 18.6648 33.388 24.2993
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.8015 16.0034 14.6032 12.3556 7.71119

CAGE analysis