Hb_001377_070

Information

Type -
Description -
Location Contig1377: 51407-54280
Sequence    

Annotation

kegg
ID rcu:RCOM_0719410
description hypothetical protein
nr
ID XP_002523369.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q84MC7
description Abscisic acid receptor PYL9 OS=Arabidopsis thaliana GN=PYL9 PE=1 SV=1
trembl
ID B9SBK0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0719410 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10371: 52763-53319 , PASA_asmbl_10372: 51418-54199 , PASA_asmbl_10373: 52315-52701
cDNA
(Sanger)
(ID:Location)		 046_F13.ab1: 51893-54179

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001347_040 0.0644283491 - - PREDICTED: uncharacterized protein LOC105633920 [Jatropha curcas]
3 Hb_000116_060 0.0673653013 - - plant ubiquilin, putative [Ricinus communis]
4 Hb_008159_020 0.0752294929 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
5 Hb_111198_010 0.0836419153 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
6 Hb_000732_120 0.0837747279 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
7 Hb_008511_030 0.0840497137 - - guanine nucleotide-binding protein beta, putative [Ricinus communis]
8 Hb_000832_090 0.0846320261 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
9 Hb_000521_260 0.0847874091 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
10 Hb_000162_280 0.0863587454 - - PREDICTED: CTL-like protein DDB_G0288717 [Populus euphratica]
11 Hb_000331_330 0.087924018 - - PREDICTED: transcription factor GTE10 isoform X1 [Jatropha curcas]
12 Hb_000680_090 0.0909134322 - - Protein SEY1, putative [Ricinus communis]
13 Hb_008112_030 0.0909455203 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003124_130 0.0919110064 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
15 Hb_002304_090 0.0920255104 - - PREDICTED: probable ATP-dependent RNA helicase DHX35 isoform X1 [Jatropha curcas]
16 Hb_010222_050 0.0921406266 - - PREDICTED: WD repeat-containing protein 48 isoform X2 [Jatropha curcas]
17 Hb_000256_190 0.0921729943 - - PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Jatropha curcas]
18 Hb_007676_100 0.0923343892 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
19 Hb_002078_110 0.0924743557 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
20 Hb_005489_080 0.0926477384 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001377_070 Hb_001377_070 Hb_001347_040 Hb_001347_040 Hb_001377_070--Hb_001347_040 Hb_000116_060 Hb_000116_060 Hb_001377_070--Hb_000116_060 Hb_008159_020 Hb_008159_020 Hb_001377_070--Hb_008159_020 Hb_111198_010 Hb_111198_010 Hb_001377_070--Hb_111198_010 Hb_000732_120 Hb_000732_120 Hb_001377_070--Hb_000732_120 Hb_008511_030 Hb_008511_030 Hb_001377_070--Hb_008511_030 Hb_131646_010 Hb_131646_010 Hb_001347_040--Hb_131646_010 Hb_143395_010 Hb_143395_010 Hb_001347_040--Hb_143395_010 Hb_003124_220 Hb_003124_220 Hb_001347_040--Hb_003124_220 Hb_000256_190 Hb_000256_190 Hb_001347_040--Hb_000256_190 Hb_002078_110 Hb_002078_110 Hb_001347_040--Hb_002078_110 Hb_001243_060 Hb_001243_060 Hb_000116_060--Hb_001243_060 Hb_003680_230 Hb_003680_230 Hb_000116_060--Hb_003680_230 Hb_000162_280 Hb_000162_280 Hb_000116_060--Hb_000162_280 Hb_009112_010 Hb_009112_010 Hb_000116_060--Hb_009112_010 Hb_003040_020 Hb_003040_020 Hb_000116_060--Hb_003040_020 Hb_004235_080 Hb_004235_080 Hb_008159_020--Hb_004235_080 Hb_000179_030 Hb_000179_030 Hb_008159_020--Hb_000179_030 Hb_000768_110 Hb_000768_110 Hb_008159_020--Hb_000768_110 Hb_006252_040 Hb_006252_040 Hb_008159_020--Hb_006252_040 Hb_002823_030 Hb_002823_030 Hb_008159_020--Hb_002823_030 Hb_005914_060 Hb_005914_060 Hb_008159_020--Hb_005914_060 Hb_031527_020 Hb_031527_020 Hb_111198_010--Hb_031527_020 Hb_032202_110 Hb_032202_110 Hb_111198_010--Hb_032202_110 Hb_003633_070 Hb_003633_070 Hb_111198_010--Hb_003633_070 Hb_111198_010--Hb_002078_110 Hb_005489_080 Hb_005489_080 Hb_111198_010--Hb_005489_080 Hb_010738_010 Hb_010738_010 Hb_111198_010--Hb_010738_010 Hb_000732_120--Hb_005489_080 Hb_000959_270 Hb_000959_270 Hb_000732_120--Hb_000959_270 Hb_000832_090 Hb_000832_090 Hb_000732_120--Hb_000832_090 Hb_000732_120--Hb_031527_020 Hb_000732_120--Hb_111198_010 Hb_004970_090 Hb_004970_090 Hb_000732_120--Hb_004970_090 Hb_008511_030--Hb_031527_020 Hb_008511_030--Hb_005489_080 Hb_000457_050 Hb_000457_050 Hb_008511_030--Hb_000457_050 Hb_000140_080 Hb_000140_080 Hb_008511_030--Hb_000140_080 Hb_033095_020 Hb_033095_020 Hb_008511_030--Hb_033095_020 Hb_008511_030--Hb_000959_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
81.8908 112.551 70.0162 64.7119 117.244 148.134
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
51.8153 63.4722 59.4373 58.2661 29.0683

CAGE analysis