Hb_001243_060

Information

Type -
Description -
Location Contig1243: 64632-75960
Sequence    

Annotation

kegg
ID tcc:TCM_006686
description Non-imprinted in Prader-Willi/Angelman syndrome region protein
nr
ID XP_012084372.1
description PREDICTED: probable magnesium transporter NIPA6 [Jatropha curcas]
swissprot
ID Q8GWX2
description Probable magnesium transporter NIPA6 OS=Arabidopsis thaliana GN=At2g21120 PE=2 SV=1
trembl
ID A0A067JXN0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19583 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable magnesium transporter nipa6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07396: 64432-75874
cDNA
(Sanger)
(ID:Location)		 005_H23.ab1: 74032-75874 , 042_J02.ab1: 74199-75867 , 044_A15.ab1: 74164-75874

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001243_060 0.0 - - PREDICTED: probable magnesium transporter NIPA6 [Jatropha curcas]
2 Hb_000116_060 0.0564725153 - - plant ubiquilin, putative [Ricinus communis]
3 Hb_009780_100 0.0580869465 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
4 Hb_000230_430 0.0587289964 - - catalytic, putative [Ricinus communis]
5 Hb_000331_330 0.0671802676 - - PREDICTED: transcription factor GTE10 isoform X1 [Jatropha curcas]
6 Hb_003858_090 0.0731276208 - - Filamin-A-interacting protein, putative [Ricinus communis]
7 Hb_001141_370 0.0740885493 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
8 Hb_003680_230 0.077998453 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
9 Hb_003633_070 0.0795066286 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
10 Hb_009112_010 0.0801974778 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
11 Hb_009771_100 0.083162254 - - PREDICTED: uncharacterized protein LOC105141784 [Populus euphratica]
12 Hb_004629_010 0.0848961152 - - PREDICTED: AP-3 complex subunit delta [Jatropha curcas]
13 Hb_006615_120 0.0850691074 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
14 Hb_000162_280 0.0851743618 - - PREDICTED: CTL-like protein DDB_G0288717 [Populus euphratica]
15 Hb_000152_340 0.0860319864 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
16 Hb_005104_010 0.087939206 - - PREDICTED: uncharacterized protein LOC105140796 isoform X1 [Populus euphratica]
17 Hb_000960_050 0.0884136341 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
18 Hb_000780_170 0.0885470811 - - PREDICTED: OBERON-like protein [Jatropha curcas]
19 Hb_000732_120 0.0886513812 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
20 Hb_000191_130 0.0890191206 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001243_060 Hb_001243_060 Hb_000116_060 Hb_000116_060 Hb_001243_060--Hb_000116_060 Hb_009780_100 Hb_009780_100 Hb_001243_060--Hb_009780_100 Hb_000230_430 Hb_000230_430 Hb_001243_060--Hb_000230_430 Hb_000331_330 Hb_000331_330 Hb_001243_060--Hb_000331_330 Hb_003858_090 Hb_003858_090 Hb_001243_060--Hb_003858_090 Hb_001141_370 Hb_001141_370 Hb_001243_060--Hb_001141_370 Hb_003680_230 Hb_003680_230 Hb_000116_060--Hb_003680_230 Hb_000162_280 Hb_000162_280 Hb_000116_060--Hb_000162_280 Hb_001377_070 Hb_001377_070 Hb_000116_060--Hb_001377_070 Hb_009112_010 Hb_009112_010 Hb_000116_060--Hb_009112_010 Hb_003040_020 Hb_003040_020 Hb_000116_060--Hb_003040_020 Hb_009771_100 Hb_009771_100 Hb_009780_100--Hb_009771_100 Hb_003633_070 Hb_003633_070 Hb_009780_100--Hb_003633_070 Hb_006615_120 Hb_006615_120 Hb_009780_100--Hb_006615_120 Hb_003117_020 Hb_003117_020 Hb_009780_100--Hb_003117_020 Hb_009780_100--Hb_000230_430 Hb_002902_020 Hb_002902_020 Hb_000230_430--Hb_002902_020 Hb_004631_190 Hb_004631_190 Hb_000230_430--Hb_004631_190 Hb_000264_070 Hb_000264_070 Hb_000230_430--Hb_000264_070 Hb_118840_050 Hb_118840_050 Hb_000230_430--Hb_118840_050 Hb_007676_100 Hb_007676_100 Hb_000331_330--Hb_007676_100 Hb_000331_330--Hb_000116_060 Hb_004128_050 Hb_004128_050 Hb_000331_330--Hb_004128_050 Hb_005489_080 Hb_005489_080 Hb_000331_330--Hb_005489_080 Hb_002615_090 Hb_002615_090 Hb_000331_330--Hb_002615_090 Hb_015475_020 Hb_015475_020 Hb_003858_090--Hb_015475_020 Hb_001221_160 Hb_001221_160 Hb_003858_090--Hb_001221_160 Hb_000753_100 Hb_000753_100 Hb_003858_090--Hb_000753_100 Hb_003858_090--Hb_001141_370 Hb_000152_340 Hb_000152_340 Hb_003858_090--Hb_000152_340 Hb_000544_060 Hb_000544_060 Hb_001141_370--Hb_000544_060 Hb_000236_220 Hb_000236_220 Hb_001141_370--Hb_000236_220 Hb_001141_370--Hb_009771_100 Hb_000340_110 Hb_000340_110 Hb_001141_370--Hb_000340_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.2474 20.4158 10.3149 9.1468 16.9759 15.9533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.23298 6.68085 5.64438 6.1059 6.36796

CAGE analysis