Hb_003117_020

Information

Type transcription factor
Description TF Family: BBR-BPC
Location Contig3117: 8539-10354
Sequence    

Annotation

kegg
ID rcu:RCOM_1596660
description hypothetical protein
nr
ID XP_012073849.1
description PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]
swissprot
ID Q8L999
description Protein BASIC PENTACYSTEINE6 OS=Arabidopsis thaliana GN=BPC6 PE=1 SV=1
trembl
ID A0A067KPK2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08249 PE=4 SV=1
Gene Ontology
ID GO:0003700
description protein basic pentacysteine6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32955: 7646-7762 , PASA_asmbl_32957: 8548-10342
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003117_020 0.0 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]
2 Hb_140049_040 0.0709792374 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
3 Hb_002542_130 0.0733219643 transcription factor TF Family: HB Homeobox protein LUMINIDEPENDENS, putative [Ricinus communis]
4 Hb_000103_100 0.0755495662 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Jatropha curcas]
5 Hb_002477_250 0.0770175606 - - DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus communis]
6 Hb_009780_100 0.0774499672 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
7 Hb_003633_070 0.0791492695 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
8 Hb_000264_030 0.0795244592 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
9 Hb_002325_040 0.0800493869 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
10 Hb_003927_040 0.0809132094 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
11 Hb_000556_170 0.0816597509 - - PREDICTED: uncharacterized protein LOC105643102 isoform X2 [Jatropha curcas]
12 Hb_001225_030 0.083477091 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 1 [Jatropha curcas]
13 Hb_000061_490 0.0837881803 - - hypothetical protein CISIN_1g0362002mg, partial [Citrus sinensis]
14 Hb_004410_070 0.0838653623 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
15 Hb_003866_080 0.0840576345 - - PREDICTED: uncharacterized protein LOC105639150 [Jatropha curcas]
16 Hb_005542_050 0.0841659829 - - PREDICTED: LOW QUALITY PROTEIN: probable inactive serine/threonine-protein kinase scy1 [Prunus mume]
17 Hb_012305_030 0.0847309518 - - hypothetical protein JCGZ_18979 [Jatropha curcas]
18 Hb_001767_140 0.0849109525 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
19 Hb_002272_020 0.0850322863 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
20 Hb_002085_030 0.0863639917 - - PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003117_020 Hb_003117_020 Hb_140049_040 Hb_140049_040 Hb_003117_020--Hb_140049_040 Hb_002542_130 Hb_002542_130 Hb_003117_020--Hb_002542_130 Hb_000103_100 Hb_000103_100 Hb_003117_020--Hb_000103_100 Hb_002477_250 Hb_002477_250 Hb_003117_020--Hb_002477_250 Hb_009780_100 Hb_009780_100 Hb_003117_020--Hb_009780_100 Hb_003633_070 Hb_003633_070 Hb_003117_020--Hb_003633_070 Hb_000174_060 Hb_000174_060 Hb_140049_040--Hb_000174_060 Hb_000289_040 Hb_000289_040 Hb_140049_040--Hb_000289_040 Hb_001767_140 Hb_001767_140 Hb_140049_040--Hb_001767_140 Hb_002876_130 Hb_002876_130 Hb_140049_040--Hb_002876_130 Hb_000230_090 Hb_000230_090 Hb_140049_040--Hb_000230_090 Hb_001277_020 Hb_001277_020 Hb_140049_040--Hb_001277_020 Hb_001231_090 Hb_001231_090 Hb_002542_130--Hb_001231_090 Hb_001545_150 Hb_001545_150 Hb_002542_130--Hb_001545_150 Hb_001277_300 Hb_001277_300 Hb_002542_130--Hb_001277_300 Hb_005188_040 Hb_005188_040 Hb_002542_130--Hb_005188_040 Hb_004410_070 Hb_004410_070 Hb_002542_130--Hb_004410_070 Hb_002282_060 Hb_002282_060 Hb_002542_130--Hb_002282_060 Hb_000103_100--Hb_003633_070 Hb_008695_110 Hb_008695_110 Hb_000103_100--Hb_008695_110 Hb_000796_180 Hb_000796_180 Hb_000103_100--Hb_000796_180 Hb_010738_010 Hb_010738_010 Hb_000103_100--Hb_010738_010 Hb_000103_100--Hb_001767_140 Hb_002325_040 Hb_002325_040 Hb_002477_250--Hb_002325_040 Hb_000809_160 Hb_000809_160 Hb_002477_250--Hb_000809_160 Hb_001754_030 Hb_001754_030 Hb_002477_250--Hb_001754_030 Hb_003470_030 Hb_003470_030 Hb_002477_250--Hb_003470_030 Hb_000264_070 Hb_000264_070 Hb_002477_250--Hb_000264_070 Hb_001135_120 Hb_001135_120 Hb_002477_250--Hb_001135_120 Hb_001243_060 Hb_001243_060 Hb_009780_100--Hb_001243_060 Hb_009771_100 Hb_009771_100 Hb_009780_100--Hb_009771_100 Hb_009780_100--Hb_003633_070 Hb_006615_120 Hb_006615_120 Hb_009780_100--Hb_006615_120 Hb_000230_430 Hb_000230_430 Hb_009780_100--Hb_000230_430 Hb_001799_050 Hb_001799_050 Hb_003633_070--Hb_001799_050 Hb_000418_140 Hb_000418_140 Hb_003633_070--Hb_000418_140 Hb_009112_010 Hb_009112_010 Hb_003633_070--Hb_009112_010 Hb_000162_280 Hb_000162_280 Hb_003633_070--Hb_000162_280 Hb_001143_250 Hb_001143_250 Hb_003633_070--Hb_001143_250 Hb_000640_310 Hb_000640_310 Hb_003633_070--Hb_000640_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.7099 39.1631 20.324 14.9088 20.5787 24.1983
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6834 18.0681 9.25375 14.3735 14.67

CAGE analysis