Hb_015475_020

Information

Type -
Description -
Location Contig15475: 13257-18328
Sequence    

Annotation

kegg
ID rcu:RCOM_0736490
description importin beta-1, putative
nr
ID XP_002526256.1
description importin beta-1, putative [Ricinus communis]
swissprot
ID Q9FJD4
description Importin subunit beta-1 OS=Arabidopsis thaliana GN=KPNB1 PE=1 SV=1
trembl
ID B9SJT7
description Importin beta-1, putative OS=Ricinus communis GN=RCOM_0736490 PE=4 SV=1
Gene Ontology
ID GO:0005634
description importin subunit beta-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13410: 13270-18232 , PASA_asmbl_13411: 17560-17956
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015475_020 0.0 - - importin beta-1, putative [Ricinus communis]
2 Hb_001221_160 0.0513409128 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
3 Hb_002349_050 0.0573026304 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105645502 [Jatropha curcas]
4 Hb_003858_090 0.0609441614 - - Filamin-A-interacting protein, putative [Ricinus communis]
5 Hb_133047_010 0.0748555819 - - xanthine dehydrogenase, putative [Ricinus communis]
6 Hb_001080_270 0.0833448663 - - PREDICTED: NF-kappa-B-activating protein [Jatropha curcas]
7 Hb_000753_100 0.087135529 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105640677 isoform X1 [Jatropha curcas]
8 Hb_004543_030 0.0875466935 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
9 Hb_004659_080 0.0890105114 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
10 Hb_018133_050 0.0913733555 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
11 Hb_000813_100 0.0916176695 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
12 Hb_000544_060 0.0933455026 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
13 Hb_034243_020 0.0938710703 - - PREDICTED: elongator complex protein 1 isoform X1 [Jatropha curcas]
14 Hb_000011_210 0.0946911209 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
15 Hb_003710_040 0.0950650998 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
16 Hb_007813_030 0.0955201713 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At4g19050 [Jatropha curcas]
17 Hb_000032_010 0.0958126381 - - crooked neck protein, putative [Ricinus communis]
18 Hb_003994_100 0.0967063195 transcription factor TF Family: PHD PREDICTED: histone acetyltransferase HAC1 isoform X1 [Jatropha curcas]
19 Hb_004629_010 0.0969344501 - - PREDICTED: AP-3 complex subunit delta [Jatropha curcas]
20 Hb_000832_320 0.0971843224 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_015475_020 Hb_015475_020 Hb_001221_160 Hb_001221_160 Hb_015475_020--Hb_001221_160 Hb_002349_050 Hb_002349_050 Hb_015475_020--Hb_002349_050 Hb_003858_090 Hb_003858_090 Hb_015475_020--Hb_003858_090 Hb_133047_010 Hb_133047_010 Hb_015475_020--Hb_133047_010 Hb_001080_270 Hb_001080_270 Hb_015475_020--Hb_001080_270 Hb_000753_100 Hb_000753_100 Hb_015475_020--Hb_000753_100 Hb_004659_080 Hb_004659_080 Hb_001221_160--Hb_004659_080 Hb_001221_160--Hb_003858_090 Hb_003710_040 Hb_003710_040 Hb_001221_160--Hb_003710_040 Hb_001221_160--Hb_133047_010 Hb_004899_070 Hb_004899_070 Hb_001221_160--Hb_004899_070 Hb_015026_050 Hb_015026_050 Hb_002349_050--Hb_015026_050 Hb_000813_100 Hb_000813_100 Hb_002349_050--Hb_000813_100 Hb_002349_050--Hb_133047_010 Hb_002349_050--Hb_001221_160 Hb_001946_300 Hb_001946_300 Hb_002349_050--Hb_001946_300 Hb_001243_060 Hb_001243_060 Hb_003858_090--Hb_001243_060 Hb_003858_090--Hb_000753_100 Hb_001141_370 Hb_001141_370 Hb_003858_090--Hb_001141_370 Hb_000152_340 Hb_000152_340 Hb_003858_090--Hb_000152_340 Hb_111985_080 Hb_111985_080 Hb_133047_010--Hb_111985_080 Hb_004884_010 Hb_004884_010 Hb_133047_010--Hb_004884_010 Hb_002392_030 Hb_002392_030 Hb_133047_010--Hb_002392_030 Hb_034243_020 Hb_034243_020 Hb_133047_010--Hb_034243_020 Hb_002301_080 Hb_002301_080 Hb_133047_010--Hb_002301_080 Hb_148909_030 Hb_148909_030 Hb_133047_010--Hb_148909_030 Hb_000227_380 Hb_000227_380 Hb_001080_270--Hb_000227_380 Hb_004718_010 Hb_004718_010 Hb_001080_270--Hb_004718_010 Hb_002411_120 Hb_002411_120 Hb_001080_270--Hb_002411_120 Hb_000997_030 Hb_000997_030 Hb_001080_270--Hb_000997_030 Hb_000959_040 Hb_000959_040 Hb_001080_270--Hb_000959_040 Hb_001080_270--Hb_000813_100 Hb_000032_010 Hb_000032_010 Hb_000753_100--Hb_000032_010 Hb_003540_160 Hb_003540_160 Hb_000753_100--Hb_003540_160 Hb_003040_020 Hb_003040_020 Hb_000753_100--Hb_003040_020 Hb_001117_190 Hb_001117_190 Hb_000753_100--Hb_001117_190 Hb_140049_020 Hb_140049_020 Hb_000753_100--Hb_140049_020 Hb_005188_060 Hb_005188_060 Hb_000753_100--Hb_005188_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.1122 34.3718 7.61698 11.0294 30.921 24.7469
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.95286 6.11481 9.53387 11.164 13.6176

CAGE analysis