Hb_003710_040

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig3710: 138192-141070
Sequence    

Annotation

kegg
ID cic:CICLE_v10023392mg
description hypothetical protein
nr
ID XP_012080879.1
description PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
swissprot
ID Q38834
description Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2
trembl
ID A0A067K6D7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16251 PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance rpp13-like protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38051: 137990-139391 , PASA_asmbl_38053: 140137-140578
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003710_040 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
2 Hb_001221_160 0.070991611 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
3 Hb_004899_070 0.0805985226 - - PREDICTED: RRP12-like protein [Jatropha curcas]
4 Hb_009028_030 0.0820364796 desease resistance Gene Name: NB-ARC NBS type disease resistance protein, putative [Theobroma cacao]
5 Hb_000640_200 0.0858624384 - - hypothetical protein RCOM_1346600 [Ricinus communis]
6 Hb_057451_010 0.0894404846 - - PREDICTED: uncharacterized protein LOC105635588 [Jatropha curcas]
7 Hb_000261_290 0.0948159927 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
8 Hb_015475_020 0.0950650998 - - importin beta-1, putative [Ricinus communis]
9 Hb_010584_010 0.0988743516 - - PREDICTED: probable zinc transporter protein DDB_G0282067 [Jatropha curcas]
10 Hb_003858_090 0.0996427838 - - Filamin-A-interacting protein, putative [Ricinus communis]
11 Hb_005333_030 0.1061422051 - - hypothetical protein JCGZ_15866 [Jatropha curcas]
12 Hb_011465_030 0.1076008002 - - PREDICTED: B2 protein [Jatropha curcas]
13 Hb_000098_130 0.1077819448 - - PREDICTED: serine/threonine-protein kinase SRK2A [Jatropha curcas]
14 Hb_001301_230 0.1087393369 - - PREDICTED: uncharacterized protein LOC105632949 isoform X2 [Jatropha curcas]
15 Hb_027420_050 0.1104314722 - - -
16 Hb_001080_270 0.1105807333 - - PREDICTED: NF-kappa-B-activating protein [Jatropha curcas]
17 Hb_000265_250 0.1108485349 - - auxilin, putative [Ricinus communis]
18 Hb_001946_300 0.1109986353 - - PREDICTED: F-box protein At-B [Jatropha curcas]
19 Hb_000813_100 0.11178219 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
20 Hb_000313_340 0.1118900044 - - DNA repair protein xp-E, putative [Ricinus communis]

Gene co-expression network

sample Hb_003710_040 Hb_003710_040 Hb_001221_160 Hb_001221_160 Hb_003710_040--Hb_001221_160 Hb_004899_070 Hb_004899_070 Hb_003710_040--Hb_004899_070 Hb_009028_030 Hb_009028_030 Hb_003710_040--Hb_009028_030 Hb_000640_200 Hb_000640_200 Hb_003710_040--Hb_000640_200 Hb_057451_010 Hb_057451_010 Hb_003710_040--Hb_057451_010 Hb_000261_290 Hb_000261_290 Hb_003710_040--Hb_000261_290 Hb_015475_020 Hb_015475_020 Hb_001221_160--Hb_015475_020 Hb_004659_080 Hb_004659_080 Hb_001221_160--Hb_004659_080 Hb_003858_090 Hb_003858_090 Hb_001221_160--Hb_003858_090 Hb_133047_010 Hb_133047_010 Hb_001221_160--Hb_133047_010 Hb_001221_160--Hb_004899_070 Hb_000098_130 Hb_000098_130 Hb_004899_070--Hb_000098_130 Hb_004899_070--Hb_000261_290 Hb_000120_620 Hb_000120_620 Hb_004899_070--Hb_000120_620 Hb_004970_160 Hb_004970_160 Hb_004899_070--Hb_004970_160 Hb_004899_070--Hb_000640_200 Hb_000813_100 Hb_000813_100 Hb_004899_070--Hb_000813_100 Hb_009028_030--Hb_057451_010 Hb_000265_250 Hb_000265_250 Hb_009028_030--Hb_000265_250 Hb_003157_010 Hb_003157_010 Hb_009028_030--Hb_003157_010 Hb_009028_030--Hb_004899_070 Hb_011465_030 Hb_011465_030 Hb_009028_030--Hb_011465_030 Hb_006501_020 Hb_006501_020 Hb_000640_200--Hb_006501_020 Hb_000640_200--Hb_057451_010 Hb_006588_050 Hb_006588_050 Hb_000640_200--Hb_006588_050 Hb_000640_200--Hb_000813_100 Hb_031069_020 Hb_031069_020 Hb_000640_200--Hb_031069_020 Hb_057451_010--Hb_003157_010 Hb_057451_010--Hb_004899_070 Hb_000313_340 Hb_000313_340 Hb_057451_010--Hb_000313_340 Hb_000261_290--Hb_000098_130 Hb_000261_290--Hb_000120_620 Hb_000261_290--Hb_000313_340 Hb_003097_180 Hb_003097_180 Hb_000261_290--Hb_003097_180 Hb_000261_290--Hb_006588_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.2914 30.2216 6.68852 12.715 30.2331 27.3284
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.1858 5.40298 4.61342 9.72226 6.60356

CAGE analysis