Hb_000265_250

Information

Type -
Description -
Location Contig265: 272138-280047
Sequence    

Annotation

kegg
ID rcu:RCOM_1211560
description auxilin, putative
nr
ID XP_002524574.1
description auxilin, putative [Ricinus communis]
swissprot
ID Q9SU08
description Auxilin-related protein 1 OS=Arabidopsis thaliana GN=At4g12780 PE=1 SV=2
trembl
ID B9SF05
description Auxilin, putative OS=Ricinus communis GN=RCOM_1211560 PE=4 SV=1
Gene Ontology
ID GO:0005829
description auxilin-related protein 2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27718: 272104-276215 , PASA_asmbl_27720: 273544-273955 , PASA_asmbl_27721: 275479-275789 , PASA_asmbl_27722: 276260-279795
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000265_250 0.0 - - auxilin, putative [Ricinus communis]
2 Hb_011465_030 0.0743271987 - - PREDICTED: B2 protein [Jatropha curcas]
3 Hb_002477_150 0.083031228 transcription factor TF Family: Alfin-like DNA binding protein, putative [Ricinus communis]
4 Hb_148209_020 0.0864963889 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
5 Hb_009028_030 0.090371609 desease resistance Gene Name: NB-ARC NBS type disease resistance protein, putative [Theobroma cacao]
6 Hb_001247_230 0.1031960626 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_002849_080 0.1037203116 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
8 Hb_001301_230 0.105010764 - - PREDICTED: uncharacterized protein LOC105632949 isoform X2 [Jatropha curcas]
9 Hb_002609_010 0.1064452317 - - PREDICTED: uncharacterized protein LOC105630866 [Jatropha curcas]
10 Hb_004899_070 0.1067734425 - - PREDICTED: RRP12-like protein [Jatropha curcas]
11 Hb_010584_010 0.109698259 - - PREDICTED: probable zinc transporter protein DDB_G0282067 [Jatropha curcas]
12 Hb_003710_040 0.1108485349 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
13 Hb_003157_010 0.1124216751 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
14 Hb_000640_200 0.1129078404 - - hypothetical protein RCOM_1346600 [Ricinus communis]
15 Hb_000181_360 0.1142863031 - - PREDICTED: uncharacterized protein LOC105644273 [Jatropha curcas]
16 Hb_057451_010 0.1144063242 - - PREDICTED: uncharacterized protein LOC105635588 [Jatropha curcas]
17 Hb_007257_050 0.1161891858 - - protein with unknown function [Ricinus communis]
18 Hb_000813_100 0.1178862396 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
19 Hb_006501_020 0.1193663778 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
20 Hb_000808_070 0.1194615478 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]

Gene co-expression network

sample Hb_000265_250 Hb_000265_250 Hb_011465_030 Hb_011465_030 Hb_000265_250--Hb_011465_030 Hb_002477_150 Hb_002477_150 Hb_000265_250--Hb_002477_150 Hb_148209_020 Hb_148209_020 Hb_000265_250--Hb_148209_020 Hb_009028_030 Hb_009028_030 Hb_000265_250--Hb_009028_030 Hb_001247_230 Hb_001247_230 Hb_000265_250--Hb_001247_230 Hb_002849_080 Hb_002849_080 Hb_000265_250--Hb_002849_080 Hb_011465_030--Hb_002477_150 Hb_007403_050 Hb_007403_050 Hb_011465_030--Hb_007403_050 Hb_001946_300 Hb_001946_300 Hb_011465_030--Hb_001946_300 Hb_011465_030--Hb_002849_080 Hb_000540_120 Hb_000540_120 Hb_011465_030--Hb_000540_120 Hb_002477_150--Hb_148209_020 Hb_005946_170 Hb_005946_170 Hb_002477_150--Hb_005946_170 Hb_002659_060 Hb_002659_060 Hb_002477_150--Hb_002659_060 Hb_002477_150--Hb_001946_300 Hb_148209_020--Hb_002849_080 Hb_012395_160 Hb_012395_160 Hb_148209_020--Hb_012395_160 Hb_006316_070 Hb_006316_070 Hb_148209_020--Hb_006316_070 Hb_002977_010 Hb_002977_010 Hb_148209_020--Hb_002977_010 Hb_005399_020 Hb_005399_020 Hb_148209_020--Hb_005399_020 Hb_057451_010 Hb_057451_010 Hb_009028_030--Hb_057451_010 Hb_003710_040 Hb_003710_040 Hb_009028_030--Hb_003710_040 Hb_003157_010 Hb_003157_010 Hb_009028_030--Hb_003157_010 Hb_004899_070 Hb_004899_070 Hb_009028_030--Hb_004899_070 Hb_009028_030--Hb_011465_030 Hb_001999_250 Hb_001999_250 Hb_001247_230--Hb_001999_250 Hb_001247_230--Hb_002849_080 Hb_001247_230--Hb_148209_020 Hb_002609_010 Hb_002609_010 Hb_001247_230--Hb_002609_010 Hb_000116_570 Hb_000116_570 Hb_001247_230--Hb_000116_570 Hb_002849_080--Hb_006316_070 Hb_002849_080--Hb_002977_010 Hb_002849_080--Hb_002609_010 Hb_005038_020 Hb_005038_020 Hb_002849_080--Hb_005038_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
75.8547 121.429 23.0229 17.8688 91.9141 93.7239
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.2232 10.6233 15.2472 26.4004 17.2215

CAGE analysis