Hb_000540_120

Information

Type -
Description -
Location Contig540: 122330-125733
Sequence    

Annotation

kegg
ID rcu:RCOM_1440910
description receptor serine-threonine protein kinase, putative (EC:2.7.10.2)
nr
ID XP_012064924.1
description PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
swissprot
ID Q9LQQ8
description Probable serine/threonine-protein kinase RLCKVII OS=Arabidopsis thaliana GN=At1g07870 PE=2 SV=1
trembl
ID Q9MAY5
description Protein kinase 2 OS=Populus nigra GN=PnPK2 PE=2 SV=1
Gene Ontology
ID GO:0004674
description probable serine threonine-protein kinase rlckvii

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47808: 122308-125708 , PASA_asmbl_47810: 124324-124527
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000540_120 0.0 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
2 Hb_011465_030 0.090893144 - - PREDICTED: B2 protein [Jatropha curcas]
3 Hb_007403_050 0.0979923442 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]
4 Hb_001189_130 0.10104034 transcription factor TF Family: NAC PREDICTED: protein ATAF2-like [Jatropha curcas]
5 Hb_000140_070 0.1028594124 - - PREDICTED: uncharacterized protein LOC105642935 isoform X1 [Jatropha curcas]
6 Hb_010831_020 0.1086590131 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
7 Hb_003125_030 0.1090957971 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
8 Hb_001638_040 0.1095001676 - - Nucleobase-ascorbate transporter 3 [Glycine soja]
9 Hb_012226_010 0.1098187254 - - PREDICTED: protein DGCR14 [Jatropha curcas]
10 Hb_007894_130 0.1104979283 - - hypothetical protein RCOM_0584960 [Ricinus communis]
11 Hb_000034_160 0.1115886107 - - hypothetical protein EUGRSUZ_F02151 [Eucalyptus grandis]
12 Hb_001141_370 0.1127917049 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
13 Hb_002837_110 0.1142109804 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 2, mitochondrial [Jatropha curcas]
14 Hb_009771_100 0.115687142 - - PREDICTED: uncharacterized protein LOC105141784 [Populus euphratica]
15 Hb_155396_010 0.1158859318 - - TMV resistance protein N, putative [Ricinus communis]
16 Hb_000061_490 0.1172716781 - - hypothetical protein CISIN_1g0362002mg, partial [Citrus sinensis]
17 Hb_046117_010 0.1175732999 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 3 [Jatropha curcas]
18 Hb_001301_320 0.1182649266 - - PREDICTED: uncharacterized protein LOC105632955 [Jatropha curcas]
19 Hb_000340_110 0.1183969761 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X1 [Jatropha curcas]
20 Hb_004032_180 0.118957066 - - PREDICTED: myosin heavy chain, non-muscle [Jatropha curcas]

Gene co-expression network

sample Hb_000540_120 Hb_000540_120 Hb_011465_030 Hb_011465_030 Hb_000540_120--Hb_011465_030 Hb_007403_050 Hb_007403_050 Hb_000540_120--Hb_007403_050 Hb_001189_130 Hb_001189_130 Hb_000540_120--Hb_001189_130 Hb_000140_070 Hb_000140_070 Hb_000540_120--Hb_000140_070 Hb_010831_020 Hb_010831_020 Hb_000540_120--Hb_010831_020 Hb_003125_030 Hb_003125_030 Hb_000540_120--Hb_003125_030 Hb_002477_150 Hb_002477_150 Hb_011465_030--Hb_002477_150 Hb_000265_250 Hb_000265_250 Hb_011465_030--Hb_000265_250 Hb_011465_030--Hb_007403_050 Hb_001946_300 Hb_001946_300 Hb_011465_030--Hb_001946_300 Hb_002849_080 Hb_002849_080 Hb_011465_030--Hb_002849_080 Hb_000034_160 Hb_000034_160 Hb_007403_050--Hb_000034_160 Hb_007403_050--Hb_001946_300 Hb_000363_130 Hb_000363_130 Hb_007403_050--Hb_000363_130 Hb_004032_180 Hb_004032_180 Hb_007403_050--Hb_004032_180 Hb_000283_130 Hb_000283_130 Hb_007403_050--Hb_000283_130 Hb_000449_050 Hb_000449_050 Hb_001189_130--Hb_000449_050 Hb_001141_370 Hb_001141_370 Hb_001189_130--Hb_001141_370 Hb_000340_110 Hb_000340_110 Hb_001189_130--Hb_000340_110 Hb_000152_340 Hb_000152_340 Hb_001189_130--Hb_000152_340 Hb_001662_030 Hb_001662_030 Hb_001189_130--Hb_001662_030 Hb_001059_100 Hb_001059_100 Hb_000140_070--Hb_001059_100 Hb_003373_040 Hb_003373_040 Hb_000140_070--Hb_003373_040 Hb_076693_020 Hb_076693_020 Hb_000140_070--Hb_076693_020 Hb_001220_030 Hb_001220_030 Hb_000140_070--Hb_001220_030 Hb_093084_070 Hb_093084_070 Hb_000140_070--Hb_093084_070 Hb_006847_040 Hb_006847_040 Hb_000140_070--Hb_006847_040 Hb_001638_040 Hb_001638_040 Hb_010831_020--Hb_001638_040 Hb_001691_150 Hb_001691_150 Hb_010831_020--Hb_001691_150 Hb_002316_050 Hb_002316_050 Hb_010831_020--Hb_002316_050 Hb_002739_150 Hb_002739_150 Hb_010831_020--Hb_002739_150 Hb_155702_010 Hb_155702_010 Hb_010831_020--Hb_155702_010 Hb_104265_030 Hb_104265_030 Hb_003125_030--Hb_104265_030 Hb_012226_010 Hb_012226_010 Hb_003125_030--Hb_012226_010 Hb_003506_070 Hb_003506_070 Hb_003125_030--Hb_003506_070 Hb_001525_010 Hb_001525_010 Hb_003125_030--Hb_001525_010 Hb_000327_280 Hb_000327_280 Hb_003125_030--Hb_000327_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.0284 117.346 22.8374 36.9358 48.387 63.7086
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.6955 19.83 19.5059 20.3421 11.6841

CAGE analysis