Hb_001691_150

Information

Type -
Description -
Location Contig1691: 231852-238034
Sequence    

Annotation

kegg
ID rcu:RCOM_0936640
description ubiquitin conjugating enzyme, putative (EC:6.3.2.19)
nr
ID XP_012091604.1
description PREDICTED: probable ubiquitin-conjugating enzyme E2 24 [Jatropha curcas]
swissprot
ID Q8VY10
description Probable ubiquitin-conjugating enzyme E2 24 OS=Arabidopsis thaliana GN=UBC24 PE=2 SV=1
trembl
ID A0A067JB29
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21443 PE=4 SV=1
Gene Ontology
ID GO:0008152
description probable ubiquitin-conjugating enzyme e2 24

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15727: 230936-231710 , PASA_asmbl_15728: 231895-232252 , PASA_asmbl_15729: 232380-233391 , PASA_asmbl_15730: 233595-237911
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001691_150 0.0 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 24 [Jatropha curcas]
2 Hb_000525_010 0.1119805235 - - ring finger protein, putative [Ricinus communis]
3 Hb_010831_020 0.1264502142 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
4 Hb_000025_330 0.1492711486 - - hypothetical protein JCGZ_22759 [Jatropha curcas]
5 Hb_000665_010 0.1530112069 - - hypothetical protein 20 [Hevea brasiliensis]
6 Hb_002739_150 0.1578301034 - - Uncharacterized protein TCM_016791 [Theobroma cacao]
7 Hb_002837_110 0.1585897932 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 2, mitochondrial [Jatropha curcas]
8 Hb_000540_120 0.160705655 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
9 Hb_000757_100 0.1611351969 - - SPla/RYanodine receptor domain-containing protein isoform 2 [Theobroma cacao]
10 Hb_003430_060 0.1612103382 - - PREDICTED: potassium transporter 23 isoform X2 [Elaeis guineensis]
11 Hb_000453_100 0.1629199319 - - PREDICTED: metallothionein-like protein 1 [Sesamum indicum]
12 Hb_000574_100 0.167405729 - - DEAD-box protein abstrakt [Populus trichocarpa]
13 Hb_002248_140 0.1698136619 - - acetylglucosaminyltransferase, putative [Ricinus communis]
14 Hb_001351_080 0.1727327188 - - branched-chain amino acid aminotransferase, putative [Ricinus communis]
15 Hb_000140_070 0.173908578 - - PREDICTED: uncharacterized protein LOC105642935 isoform X1 [Jatropha curcas]
16 Hb_007850_090 0.1741716647 - - PREDICTED: probable galacturonosyltransferase 11 isoform X1 [Jatropha curcas]
17 Hb_093084_070 0.1748337921 desease resistance Gene Name: Baculo_PEP_C Disease resistance protein RPP13, putative [Ricinus communis]
18 Hb_001950_030 0.1759532494 - - PREDICTED: F-box protein SKIP2 [Jatropha curcas]
19 Hb_002454_020 0.1764854416 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 9 [Vitis vinifera]
20 Hb_000457_140 0.176884033 - - PREDICTED: transmembrane protein 136-like [Jatropha curcas]

Gene co-expression network

sample Hb_001691_150 Hb_001691_150 Hb_000525_010 Hb_000525_010 Hb_001691_150--Hb_000525_010 Hb_010831_020 Hb_010831_020 Hb_001691_150--Hb_010831_020 Hb_000025_330 Hb_000025_330 Hb_001691_150--Hb_000025_330 Hb_000665_010 Hb_000665_010 Hb_001691_150--Hb_000665_010 Hb_002739_150 Hb_002739_150 Hb_001691_150--Hb_002739_150 Hb_002837_110 Hb_002837_110 Hb_001691_150--Hb_002837_110 Hb_007850_090 Hb_007850_090 Hb_000525_010--Hb_007850_090 Hb_000525_010--Hb_000025_330 Hb_000418_070 Hb_000418_070 Hb_000525_010--Hb_000418_070 Hb_003430_060 Hb_003430_060 Hb_000525_010--Hb_003430_060 Hb_000574_100 Hb_000574_100 Hb_000525_010--Hb_000574_100 Hb_001638_040 Hb_001638_040 Hb_010831_020--Hb_001638_040 Hb_000540_120 Hb_000540_120 Hb_010831_020--Hb_000540_120 Hb_002316_050 Hb_002316_050 Hb_010831_020--Hb_002316_050 Hb_010831_020--Hb_002739_150 Hb_155702_010 Hb_155702_010 Hb_010831_020--Hb_155702_010 Hb_001864_060 Hb_001864_060 Hb_000025_330--Hb_001864_060 Hb_000140_070 Hb_000140_070 Hb_000025_330--Hb_000140_070 Hb_001247_120 Hb_001247_120 Hb_000025_330--Hb_001247_120 Hb_001054_030 Hb_001054_030 Hb_000025_330--Hb_001054_030 Hb_001123_290 Hb_001123_290 Hb_000025_330--Hb_001123_290 Hb_005551_060 Hb_005551_060 Hb_000665_010--Hb_005551_060 Hb_000665_010--Hb_000525_010 Hb_001950_030 Hb_001950_030 Hb_000665_010--Hb_001950_030 Hb_096224_040 Hb_096224_040 Hb_000665_010--Hb_096224_040 Hb_000665_010--Hb_000140_070 Hb_000009_580 Hb_000009_580 Hb_000665_010--Hb_000009_580 Hb_001055_030 Hb_001055_030 Hb_002739_150--Hb_001055_030 Hb_002739_150--Hb_001638_040 Hb_156850_070 Hb_156850_070 Hb_002739_150--Hb_156850_070 Hb_006663_030 Hb_006663_030 Hb_002739_150--Hb_006663_030 Hb_080451_010 Hb_080451_010 Hb_002739_150--Hb_080451_010 Hb_003106_030 Hb_003106_030 Hb_002837_110--Hb_003106_030 Hb_000780_170 Hb_000780_170 Hb_002837_110--Hb_000780_170 Hb_005104_010 Hb_005104_010 Hb_002837_110--Hb_005104_010 Hb_007894_130 Hb_007894_130 Hb_002837_110--Hb_007894_130 Hb_004371_010 Hb_004371_010 Hb_002837_110--Hb_004371_010 Hb_002837_110--Hb_001054_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.8933 31.5636 2.08943 22.3717 11.6993 29.564
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.21177 8.96292 9.6301 6.67979 4.26949

CAGE analysis