Hb_000418_070

Information

Type -
Description -
Location Contig418: 89935-93422
Sequence    

Annotation

kegg
ID rcu:RCOM_1090900
description auxin:hydrogen symporter, putative
nr
ID XP_002526597.1
description auxin:hydrogen symporter, putative [Ricinus communis]
swissprot
ID P38355
description Uncharacterized transporter YBR287W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YBR287W PE=1 SV=1
trembl
ID B9SKS8
description Auxin:hydrogen symporter, putative OS=Ricinus communis GN=RCOM_1090900 PE=4 SV=1
Gene Ontology
ID GO:0016021
description uncharacterized transporter ybr287w

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000418_070 0.0 - - auxin:hydrogen symporter, putative [Ricinus communis]
2 Hb_000525_010 0.1147781541 - - ring finger protein, putative [Ricinus communis]
3 Hb_000987_140 0.1193385859 - - PREDICTED: uncharacterized protein LOC105648083 isoform X1 [Jatropha curcas]
4 Hb_017987_020 0.1242405108 - - conserved hypothetical protein [Ricinus communis]
5 Hb_011311_020 0.12621623 - - PREDICTED: myosin-11 isoform X2 [Jatropha curcas]
6 Hb_000836_270 0.1361037787 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
7 Hb_000179_140 0.1375265083 - - phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
8 Hb_000031_150 0.1379734328 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
9 Hb_002890_090 0.1385458743 - - Auxin response factor 1 [Glycine soja]
10 Hb_003467_020 0.1404758443 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 13-like [Jatropha curcas]
11 Hb_003455_020 0.1431921082 - - PREDICTED: transportin-1 [Jatropha curcas]
12 Hb_002400_310 0.1437334725 - - hypothetical protein JCGZ_07138 [Jatropha curcas]
13 Hb_006637_050 0.1443408754 - - PREDICTED: ethylene-insensitive protein 2 [Jatropha curcas]
14 Hb_006663_030 0.1457124887 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
15 Hb_156850_070 0.1482651351 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002454_020 0.1496660464 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 9 [Vitis vinifera]
17 Hb_000941_130 0.1501146518 - - gamma-tubulin complex component, putative [Ricinus communis]
18 Hb_002636_180 0.1506909114 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
19 Hb_000094_310 0.1520515092 - - PREDICTED: uncharacterized membrane protein At1g75140 [Jatropha curcas]
20 Hb_002111_070 0.1523879498 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]

Gene co-expression network

sample Hb_000418_070 Hb_000418_070 Hb_000525_010 Hb_000525_010 Hb_000418_070--Hb_000525_010 Hb_000987_140 Hb_000987_140 Hb_000418_070--Hb_000987_140 Hb_017987_020 Hb_017987_020 Hb_000418_070--Hb_017987_020 Hb_011311_020 Hb_011311_020 Hb_000418_070--Hb_011311_020 Hb_000836_270 Hb_000836_270 Hb_000418_070--Hb_000836_270 Hb_000179_140 Hb_000179_140 Hb_000418_070--Hb_000179_140 Hb_007850_090 Hb_007850_090 Hb_000525_010--Hb_007850_090 Hb_000025_330 Hb_000025_330 Hb_000525_010--Hb_000025_330 Hb_001691_150 Hb_001691_150 Hb_000525_010--Hb_001691_150 Hb_003430_060 Hb_003430_060 Hb_000525_010--Hb_003430_060 Hb_000574_100 Hb_000574_100 Hb_000525_010--Hb_000574_100 Hb_012573_080 Hb_012573_080 Hb_000987_140--Hb_012573_080 Hb_000987_140--Hb_000836_270 Hb_042038_020 Hb_042038_020 Hb_000987_140--Hb_042038_020 Hb_000987_140--Hb_011311_020 Hb_005914_150 Hb_005914_150 Hb_000987_140--Hb_005914_150 Hb_006637_050 Hb_006637_050 Hb_017987_020--Hb_006637_050 Hb_132697_010 Hb_132697_010 Hb_017987_020--Hb_132697_010 Hb_000796_030 Hb_000796_030 Hb_017987_020--Hb_000796_030 Hb_183963_030 Hb_183963_030 Hb_017987_020--Hb_183963_030 Hb_002188_110 Hb_002188_110 Hb_017987_020--Hb_002188_110 Hb_010417_050 Hb_010417_050 Hb_017987_020--Hb_010417_050 Hb_000330_040 Hb_000330_040 Hb_011311_020--Hb_000330_040 Hb_009701_010 Hb_009701_010 Hb_011311_020--Hb_009701_010 Hb_073562_010 Hb_073562_010 Hb_011311_020--Hb_073562_010 Hb_010874_020 Hb_010874_020 Hb_011311_020--Hb_010874_020 Hb_168697_010 Hb_168697_010 Hb_011311_020--Hb_168697_010 Hb_000645_120 Hb_000645_120 Hb_000836_270--Hb_000645_120 Hb_001140_350 Hb_001140_350 Hb_000836_270--Hb_001140_350 Hb_000510_310 Hb_000510_310 Hb_000836_270--Hb_000510_310 Hb_000215_190 Hb_000215_190 Hb_000836_270--Hb_000215_190 Hb_001454_280 Hb_001454_280 Hb_000836_270--Hb_001454_280 Hb_005321_020 Hb_005321_020 Hb_000836_270--Hb_005321_020 Hb_000179_140--Hb_017987_020 Hb_002431_020 Hb_002431_020 Hb_000179_140--Hb_002431_020 Hb_002636_180 Hb_002636_180 Hb_000179_140--Hb_002636_180 Hb_143243_010 Hb_143243_010 Hb_000179_140--Hb_143243_010 Hb_000179_140--Hb_132697_010 Hb_002400_310 Hb_002400_310 Hb_000179_140--Hb_002400_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.6035 31.1285 2.69459 22.4344 26.656 22.9887
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.60135 8.16854 27.0283 14.9684 4.73193

CAGE analysis