Hb_017987_020

Information

Type -
Description -
Location Contig17987: 9947-20685
Sequence    

Annotation

kegg
ID rcu:RCOM_1585590
description hypothetical protein
nr
ID XP_002510037.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F4IBD7
description CSC1-like protein RXW8 OS=Arabidopsis thaliana GN=RXW8 PE=2 SV=1
trembl
ID B9R6U4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1585590 PE=4 SV=1
Gene Ontology
ID GO:0016020
description csc1-like protein rxw8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17362: 12514-13281 , PASA_asmbl_17363: 12918-13072 , PASA_asmbl_17364: 13490-15091 , PASA_asmbl_17365: 17065-17421 , PASA_asmbl_17366: 18469-19706
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017987_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006637_050 0.0773400117 - - PREDICTED: ethylene-insensitive protein 2 [Jatropha curcas]
3 Hb_132697_010 0.0905538101 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000796_030 0.0913941523 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
5 Hb_183963_030 0.0930681701 - - DNA binding protein, putative [Ricinus communis]
6 Hb_002188_110 0.0956661322 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
7 Hb_010417_050 0.0992595309 - - PREDICTED: uncharacterized protein LOC105645746 [Jatropha curcas]
8 Hb_000072_350 0.0993646515 - - PREDICTED: WPP domain-interacting tail-anchored protein 1 [Jatropha curcas]
9 Hb_003988_010 0.1013611586 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
10 Hb_003044_020 0.1027462533 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
11 Hb_000030_040 0.1028908578 - - yth domain-containing protein, putative [Ricinus communis]
12 Hb_000514_060 0.1032081071 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG isoform X1 [Jatropha curcas]
13 Hb_004128_050 0.1035888764 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
14 Hb_002150_030 0.1043831302 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
15 Hb_000179_140 0.1058221022 - - phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
16 Hb_000207_390 0.1064996976 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
17 Hb_002400_310 0.1065671533 - - hypothetical protein JCGZ_07138 [Jatropha curcas]
18 Hb_000608_320 0.1068694428 - - PREDICTED: uncharacterized protein LOC105644891 [Jatropha curcas]
19 Hb_001797_050 0.1070523188 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
20 Hb_005065_010 0.1073014611 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI11 [Jatropha curcas]

Gene co-expression network

sample Hb_017987_020 Hb_017987_020 Hb_006637_050 Hb_006637_050 Hb_017987_020--Hb_006637_050 Hb_132697_010 Hb_132697_010 Hb_017987_020--Hb_132697_010 Hb_000796_030 Hb_000796_030 Hb_017987_020--Hb_000796_030 Hb_183963_030 Hb_183963_030 Hb_017987_020--Hb_183963_030 Hb_002188_110 Hb_002188_110 Hb_017987_020--Hb_002188_110 Hb_010417_050 Hb_010417_050 Hb_017987_020--Hb_010417_050 Hb_014267_010 Hb_014267_010 Hb_006637_050--Hb_014267_010 Hb_001967_030 Hb_001967_030 Hb_006637_050--Hb_001967_030 Hb_006637_050--Hb_010417_050 Hb_000028_280 Hb_000028_280 Hb_006637_050--Hb_000028_280 Hb_002740_110 Hb_002740_110 Hb_006637_050--Hb_002740_110 Hb_000787_090 Hb_000787_090 Hb_132697_010--Hb_000787_090 Hb_002431_020 Hb_002431_020 Hb_132697_010--Hb_002431_020 Hb_075481_030 Hb_075481_030 Hb_132697_010--Hb_075481_030 Hb_000933_020 Hb_000933_020 Hb_132697_010--Hb_000933_020 Hb_000861_070 Hb_000861_070 Hb_132697_010--Hb_000861_070 Hb_009503_030 Hb_009503_030 Hb_000796_030--Hb_009503_030 Hb_000780_230 Hb_000780_230 Hb_000796_030--Hb_000780_230 Hb_002025_020 Hb_002025_020 Hb_000796_030--Hb_002025_020 Hb_003029_110 Hb_003029_110 Hb_000796_030--Hb_003029_110 Hb_000796_030--Hb_014267_010 Hb_009545_100 Hb_009545_100 Hb_000796_030--Hb_009545_100 Hb_183963_030--Hb_002188_110 Hb_000025_360 Hb_000025_360 Hb_183963_030--Hb_000025_360 Hb_000959_040 Hb_000959_040 Hb_183963_030--Hb_000959_040 Hb_010578_060 Hb_010578_060 Hb_183963_030--Hb_010578_060 Hb_004128_050 Hb_004128_050 Hb_183963_030--Hb_004128_050 Hb_001247_070 Hb_001247_070 Hb_183963_030--Hb_001247_070 Hb_002188_110--Hb_000025_360 Hb_002188_110--Hb_000959_040 Hb_007676_100 Hb_007676_100 Hb_002188_110--Hb_007676_100 Hb_000441_070 Hb_000441_070 Hb_002188_110--Hb_000441_070 Hb_002188_110--Hb_001247_070 Hb_003988_010 Hb_003988_010 Hb_010417_050--Hb_003988_010 Hb_010417_050--Hb_014267_010 Hb_004228_010 Hb_004228_010 Hb_010417_050--Hb_004228_010 Hb_001199_100 Hb_001199_100 Hb_010417_050--Hb_001199_100 Hb_000101_240 Hb_000101_240 Hb_010417_050--Hb_000101_240 Hb_001700_040 Hb_001700_040 Hb_010417_050--Hb_001700_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.52596 8.06274 1.78714 5.68965 11.5922 9.69488
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.2594 3.9893 8.04718 4.69571 3.49419

CAGE analysis