Hb_000787_090

Information

Type -
Description -
Location Contig787: 120239-125791
Sequence    

Annotation

kegg
ID vvi:100255424
description DDRGK domain-containing protein 1
nr
ID XP_003634707.1
description PREDICTED: DDRGK domain-containing protein 1 [Vitis vinifera]
swissprot
ID Q94C53
description DDRGK domain-containing protein 1 OS=Arabidopsis thaliana GN=At4g27120 PE=2 SV=1
trembl
ID D7T0B0
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0177g00150 PE=4 SV=1
Gene Ontology
ID GO:0005622
description ddrgk domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58128: 120255-124474
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000787_090 0.0 - - PREDICTED: DDRGK domain-containing protein 1 [Vitis vinifera]
2 Hb_002431_020 0.0836301611 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
3 Hb_132697_010 0.0924915114 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001347_040 0.0940675859 - - PREDICTED: uncharacterized protein LOC105633920 [Jatropha curcas]
5 Hb_004724_320 0.0966721365 - - Vesicle-associated membrane protein, putative [Ricinus communis]
6 Hb_001502_060 0.0969551246 - - DNA mismatch repair protein MSH2, putative [Ricinus communis]
7 Hb_000832_090 0.1001636999 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
8 Hb_025669_020 0.101483703 - - conserved hypothetical protein [Ricinus communis]
9 Hb_032202_170 0.1052990539 - - PREDICTED: uncharacterized protein LOC105643056 [Jatropha curcas]
10 Hb_000933_020 0.1056367833 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000256_190 0.1063802973 - - PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Jatropha curcas]
12 Hb_003124_220 0.107423576 - - PREDICTED: coiled-coil domain-containing protein 93 [Jatropha curcas]
13 Hb_075481_030 0.1075349726 - - PREDICTED: DNA-binding protein RHL1 isoform X3 [Jatropha curcas]
14 Hb_131646_010 0.1078243583 - - protein arginine n-methyltransferase, putative [Ricinus communis]
15 Hb_002499_070 0.1090456551 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
16 Hb_000844_070 0.109480716 - - hypothetical protein POPTR_0014s03640g [Populus trichocarpa]
17 Hb_002835_230 0.1100070909 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
18 Hb_017491_030 0.1104523931 - - PREDICTED: 40S ribosomal protein SA-like [Jatropha curcas]
19 Hb_004209_020 0.1110753628 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 51-like isoform X1 [Jatropha curcas]
20 Hb_002783_310 0.111546801 - - PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 [Jatropha curcas]

Gene co-expression network

sample Hb_000787_090 Hb_000787_090 Hb_002431_020 Hb_002431_020 Hb_000787_090--Hb_002431_020 Hb_132697_010 Hb_132697_010 Hb_000787_090--Hb_132697_010 Hb_001347_040 Hb_001347_040 Hb_000787_090--Hb_001347_040 Hb_004724_320 Hb_004724_320 Hb_000787_090--Hb_004724_320 Hb_001502_060 Hb_001502_060 Hb_000787_090--Hb_001502_060 Hb_000832_090 Hb_000832_090 Hb_000787_090--Hb_000832_090 Hb_002431_020--Hb_001502_060 Hb_002431_020--Hb_132697_010 Hb_001152_030 Hb_001152_030 Hb_002431_020--Hb_001152_030 Hb_000179_140 Hb_000179_140 Hb_002431_020--Hb_000179_140 Hb_002477_130 Hb_002477_130 Hb_002431_020--Hb_002477_130 Hb_017987_020 Hb_017987_020 Hb_132697_010--Hb_017987_020 Hb_075481_030 Hb_075481_030 Hb_132697_010--Hb_075481_030 Hb_000933_020 Hb_000933_020 Hb_132697_010--Hb_000933_020 Hb_000861_070 Hb_000861_070 Hb_132697_010--Hb_000861_070 Hb_131646_010 Hb_131646_010 Hb_001347_040--Hb_131646_010 Hb_143395_010 Hb_143395_010 Hb_001347_040--Hb_143395_010 Hb_001377_070 Hb_001377_070 Hb_001347_040--Hb_001377_070 Hb_003124_220 Hb_003124_220 Hb_001347_040--Hb_003124_220 Hb_000256_190 Hb_000256_190 Hb_001347_040--Hb_000256_190 Hb_002078_110 Hb_002078_110 Hb_001347_040--Hb_002078_110 Hb_004724_320--Hb_000861_070 Hb_004724_320--Hb_075481_030 Hb_012762_020 Hb_012762_020 Hb_004724_320--Hb_012762_020 Hb_000008_330 Hb_000008_330 Hb_004724_320--Hb_000008_330 Hb_000521_260 Hb_000521_260 Hb_004724_320--Hb_000521_260 Hb_005505_050 Hb_005505_050 Hb_004724_320--Hb_005505_050 Hb_000072_350 Hb_000072_350 Hb_001502_060--Hb_000072_350 Hb_007520_030 Hb_007520_030 Hb_001502_060--Hb_007520_030 Hb_000529_260 Hb_000529_260 Hb_001502_060--Hb_000529_260 Hb_001502_060--Hb_002477_130 Hb_000424_010 Hb_000424_010 Hb_001502_060--Hb_000424_010 Hb_004128_050 Hb_004128_050 Hb_001502_060--Hb_004128_050 Hb_000732_120 Hb_000732_120 Hb_000832_090--Hb_000732_120 Hb_000032_490 Hb_000032_490 Hb_000832_090--Hb_000032_490 Hb_002351_020 Hb_002351_020 Hb_000832_090--Hb_002351_020 Hb_000832_090--Hb_001347_040 Hb_000832_090--Hb_001377_070 Hb_000959_270 Hb_000959_270 Hb_000832_090--Hb_000959_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.98112 7.34808 4.49756 5.30198 15.3895 6.80021
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.38209 5.81593 4.08876 5.18084 2.35796

CAGE analysis