Hb_000008_330

Information

Type -
Description -
Location Contig8: 418786-419355
Sequence    

Annotation

kegg
ID rcu:RCOM_0153900
description 60S ribosomal protein L12, putative
nr
ID ADR71265.1
description 60S ribosomal protein L12A [Hevea brasiliensis]
swissprot
ID O50003
description 60S ribosomal protein L12 OS=Prunus armeniaca GN=RPL12 PE=2 SV=1
trembl
ID I3NMM8
description 60S ribosomal protein L12A OS=Hevea brasiliensis GN=RPL12A PE=2 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 038_E16.ab1: 418796-419453

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000008_330 0.0 - - 60S ribosomal protein L12A [Hevea brasiliensis]
2 Hb_142439_010 0.0763493831 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
3 Hb_004724_320 0.0822544714 - - Vesicle-associated membrane protein, putative [Ricinus communis]
4 Hb_001047_100 0.0855819814 - - 40S ribosomal protein S18, putative [Ricinus communis]
5 Hb_000861_070 0.0859688954 - - conserved hypothetical protein [Ricinus communis]
6 Hb_075481_030 0.0876105128 - - PREDICTED: DNA-binding protein RHL1 isoform X3 [Jatropha curcas]
7 Hb_105386_010 0.0885621293 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
8 Hb_000923_020 0.0888649237 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
9 Hb_000529_020 0.0905008877 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
10 Hb_086639_070 0.0908076543 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
11 Hb_001358_030 0.0920809415 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
12 Hb_029584_080 0.0924204461 - - serine acetyltransferase [Hevea brasiliensis]
13 Hb_000621_080 0.0929338384 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000521_260 0.0939897253 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
15 Hb_000780_060 0.0949705721 - - hypothetical protein CICLE_v10017178mg [Citrus clementina]
16 Hb_012193_010 0.096009927 - - nucleic acid binding protein, putative [Ricinus communis]
17 Hb_012799_110 0.0968146333 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
18 Hb_003376_320 0.0972306788 - - 60S ribosomal protein L12A [Hevea brasiliensis]
19 Hb_000189_340 0.0972953464 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
20 Hb_000300_060 0.0974866438 - - PREDICTED: F-box protein SKIP24 [Jatropha curcas]

Gene co-expression network

sample Hb_000008_330 Hb_000008_330 Hb_142439_010 Hb_142439_010 Hb_000008_330--Hb_142439_010 Hb_004724_320 Hb_004724_320 Hb_000008_330--Hb_004724_320 Hb_001047_100 Hb_001047_100 Hb_000008_330--Hb_001047_100 Hb_000861_070 Hb_000861_070 Hb_000008_330--Hb_000861_070 Hb_075481_030 Hb_075481_030 Hb_000008_330--Hb_075481_030 Hb_105386_010 Hb_105386_010 Hb_000008_330--Hb_105386_010 Hb_005914_060 Hb_005914_060 Hb_142439_010--Hb_005914_060 Hb_001430_120 Hb_001430_120 Hb_142439_010--Hb_001430_120 Hb_003952_070 Hb_003952_070 Hb_142439_010--Hb_003952_070 Hb_000189_340 Hb_000189_340 Hb_142439_010--Hb_000189_340 Hb_142439_010--Hb_075481_030 Hb_004724_320--Hb_000861_070 Hb_004724_320--Hb_075481_030 Hb_012762_020 Hb_012762_020 Hb_004724_320--Hb_012762_020 Hb_000521_260 Hb_000521_260 Hb_004724_320--Hb_000521_260 Hb_005505_050 Hb_005505_050 Hb_004724_320--Hb_005505_050 Hb_001047_100--Hb_105386_010 Hb_003746_040 Hb_003746_040 Hb_001047_100--Hb_003746_040 Hb_001047_100--Hb_000189_340 Hb_000290_020 Hb_000290_020 Hb_001047_100--Hb_000290_020 Hb_001358_030 Hb_001358_030 Hb_001047_100--Hb_001358_030 Hb_001766_150 Hb_001766_150 Hb_001047_100--Hb_001766_150 Hb_002890_030 Hb_002890_030 Hb_000861_070--Hb_002890_030 Hb_000861_070--Hb_075481_030 Hb_000861_070--Hb_000521_260 Hb_004162_280 Hb_004162_280 Hb_000861_070--Hb_004162_280 Hb_075481_030--Hb_000521_260 Hb_075481_030--Hb_004162_280 Hb_005276_210 Hb_005276_210 Hb_075481_030--Hb_005276_210 Hb_000173_510 Hb_000173_510 Hb_075481_030--Hb_000173_510 Hb_105386_010--Hb_001358_030 Hb_105386_010--Hb_000189_340 Hb_000349_060 Hb_000349_060 Hb_105386_010--Hb_000349_060 Hb_023001_050 Hb_023001_050 Hb_105386_010--Hb_023001_050 Hb_105386_010--Hb_003746_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
253.633 238.808 122.255 135.448 402.293 382.323
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
253.304 332.698 150.53 128.205 49.3426

CAGE analysis