Hb_004724_320

Information

Type -
Description -
Location Contig4724: 208182-210632
Sequence    

Annotation

kegg
ID rcu:RCOM_1282000
description Vesicle-associated membrane protein, putative
nr
ID XP_002523836.1
description Vesicle-associated membrane protein, putative [Ricinus communis]
swissprot
ID Q9FMR5
description Vesicle-associated membrane protein 714 OS=Arabidopsis thaliana GN=VAMP714 PE=1 SV=1
trembl
ID B9SCW7
description Vesicle-associated membrane protein, putative OS=Ricinus communis GN=RCOM_1282000 PE=4 SV=1
Gene Ontology
ID GO:0016021
description vesicle-associated membrane protein 714

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44375: 205612-207190 , PASA_asmbl_44376: 208030-212787
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004724_320 0.0 - - Vesicle-associated membrane protein, putative [Ricinus communis]
2 Hb_000861_070 0.0500093152 - - conserved hypothetical protein [Ricinus communis]
3 Hb_075481_030 0.0724629927 - - PREDICTED: DNA-binding protein RHL1 isoform X3 [Jatropha curcas]
4 Hb_012762_020 0.0763099872 - - (Di)nucleoside polyphosphate hydrolase, putative [Ricinus communis]
5 Hb_000008_330 0.0822544714 - - 60S ribosomal protein L12A [Hevea brasiliensis]
6 Hb_000521_260 0.0849129318 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
7 Hb_005505_050 0.0864014326 - - PREDICTED: uncharacterized protein LOC105639309 isoform X2 [Jatropha curcas]
8 Hb_002248_080 0.0865778711 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
9 Hb_000034_100 0.0868975672 - - dnajc14 protein, putative [Ricinus communis]
10 Hb_003464_050 0.089802439 - - hypothetical protein POPTR_0006s11880g [Populus trichocarpa]
11 Hb_112798_020 0.0904534168 - - dnajc14 protein, putative [Ricinus communis]
12 Hb_000529_020 0.0913607549 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
13 Hb_000275_170 0.0916799144 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
14 Hb_000152_380 0.091940158 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
15 Hb_054865_100 0.0920803946 - - PREDICTED: probable protein S-acyltransferase 12 isoform X1 [Jatropha curcas]
16 Hb_001347_040 0.0924319017 - - PREDICTED: uncharacterized protein LOC105633920 [Jatropha curcas]
17 Hb_001541_260 0.0943488477 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
18 Hb_017491_030 0.0945213876 - - PREDICTED: 40S ribosomal protein SA-like [Jatropha curcas]
19 Hb_002351_020 0.0947297479 - - PREDICTED: rRNA methyltransferase 3B, mitochondrial [Jatropha curcas]
20 Hb_005489_080 0.09536345 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004724_320 Hb_004724_320 Hb_000861_070 Hb_000861_070 Hb_004724_320--Hb_000861_070 Hb_075481_030 Hb_075481_030 Hb_004724_320--Hb_075481_030 Hb_012762_020 Hb_012762_020 Hb_004724_320--Hb_012762_020 Hb_000008_330 Hb_000008_330 Hb_004724_320--Hb_000008_330 Hb_000521_260 Hb_000521_260 Hb_004724_320--Hb_000521_260 Hb_005505_050 Hb_005505_050 Hb_004724_320--Hb_005505_050 Hb_002890_030 Hb_002890_030 Hb_000861_070--Hb_002890_030 Hb_000861_070--Hb_075481_030 Hb_000861_070--Hb_000521_260 Hb_000861_070--Hb_000008_330 Hb_004162_280 Hb_004162_280 Hb_000861_070--Hb_004162_280 Hb_075481_030--Hb_000521_260 Hb_075481_030--Hb_004162_280 Hb_005276_210 Hb_005276_210 Hb_075481_030--Hb_005276_210 Hb_000173_510 Hb_000173_510 Hb_075481_030--Hb_000173_510 Hb_000034_100 Hb_000034_100 Hb_012762_020--Hb_000034_100 Hb_000220_040 Hb_000220_040 Hb_012762_020--Hb_000220_040 Hb_017491_030 Hb_017491_030 Hb_012762_020--Hb_017491_030 Hb_000275_170 Hb_000275_170 Hb_012762_020--Hb_000275_170 Hb_002248_080 Hb_002248_080 Hb_012762_020--Hb_002248_080 Hb_142439_010 Hb_142439_010 Hb_000008_330--Hb_142439_010 Hb_001047_100 Hb_001047_100 Hb_000008_330--Hb_001047_100 Hb_000008_330--Hb_075481_030 Hb_105386_010 Hb_105386_010 Hb_000008_330--Hb_105386_010 Hb_000768_110 Hb_000768_110 Hb_000521_260--Hb_000768_110 Hb_006586_050 Hb_006586_050 Hb_000521_260--Hb_006586_050 Hb_000510_310 Hb_000510_310 Hb_000521_260--Hb_000510_310 Hb_008511_030 Hb_008511_030 Hb_000521_260--Hb_008511_030 Hb_000976_320 Hb_000976_320 Hb_000521_260--Hb_000976_320 Hb_000477_030 Hb_000477_030 Hb_005505_050--Hb_000477_030 Hb_005505_050--Hb_000034_100 Hb_054865_100 Hb_054865_100 Hb_005505_050--Hb_054865_100 Hb_002686_250 Hb_002686_250 Hb_005505_050--Hb_002686_250 Hb_001541_260 Hb_001541_260 Hb_005505_050--Hb_001541_260 Hb_000327_120 Hb_000327_120 Hb_005505_050--Hb_000327_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.2176 20.8855 11.6703 11.5623 34.5568 23.857
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.6156 21.0187 16.9618 10.2844 5.28475

CAGE analysis