Hb_008511_030

Information

Type -
Description -
Location Contig8511: 36012-41197
Sequence    

Annotation

kegg
ID rcu:RCOM_1674940
description guanine nucleotide-binding protein beta, putative (EC:2.3.1.48)
nr
ID XP_002509478.1
description guanine nucleotide-binding protein beta, putative [Ricinus communis]
swissprot
ID P93398
description Guanine nucleotide-binding protein subunit beta-2 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID B9RBE4
description Guanine nucleotide-binding protein beta, putative OS=Ricinus communis GN=RCOM_1674940 PE=4 SV=1
Gene Ontology
ID GO:0005515
description guanine nucleotide-binding protein subunit beta-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60410: 36099-41191 , PASA_asmbl_60411: 36014-41191
cDNA
(Sanger)
(ID:Location)		 007_D05.ab1: 39051-41191

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008511_030 0.0 - - guanine nucleotide-binding protein beta, putative [Ricinus communis]
2 Hb_031527_020 0.0707864252 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
3 Hb_005489_080 0.0746175766 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000457_050 0.0766060815 - - PREDICTED: tether containing UBX domain for GLUT4 [Jatropha curcas]
5 Hb_000140_080 0.0773447518 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
6 Hb_033095_020 0.0784221175 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000959_270 0.0804319248 - - PREDICTED: uncharacterized protein LOC105641005 [Jatropha curcas]
8 Hb_000521_260 0.0811543498 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
9 Hb_004631_180 0.0816724935 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
10 Hb_111198_010 0.0819560064 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
11 Hb_000732_120 0.0821065101 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
12 Hb_003299_030 0.08291329 - - PREDICTED: uncharacterized protein At1g27050 isoform X1 [Jatropha curcas]
13 Hb_000261_220 0.0839816197 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
14 Hb_001377_070 0.0840497137 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001946_040 0.0851845757 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000116_060 0.0877129561 - - plant ubiquilin, putative [Ricinus communis]
17 Hb_002272_020 0.0888039071 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
18 Hb_000070_080 0.0933032954 - - PREDICTED: uncharacterized protein LOC105645742 isoform X2 [Jatropha curcas]
19 Hb_106552_050 0.093446664 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]
20 Hb_003605_130 0.0938661423 - - PREDICTED: probable arabinosyltransferase ARAD1 [Populus euphratica]

Gene co-expression network

sample Hb_008511_030 Hb_008511_030 Hb_031527_020 Hb_031527_020 Hb_008511_030--Hb_031527_020 Hb_005489_080 Hb_005489_080 Hb_008511_030--Hb_005489_080 Hb_000457_050 Hb_000457_050 Hb_008511_030--Hb_000457_050 Hb_000140_080 Hb_000140_080 Hb_008511_030--Hb_000140_080 Hb_033095_020 Hb_033095_020 Hb_008511_030--Hb_033095_020 Hb_000959_270 Hb_000959_270 Hb_008511_030--Hb_000959_270 Hb_031527_020--Hb_005489_080 Hb_003785_040 Hb_003785_040 Hb_031527_020--Hb_003785_040 Hb_111198_010 Hb_111198_010 Hb_031527_020--Hb_111198_010 Hb_003609_030 Hb_003609_030 Hb_031527_020--Hb_003609_030 Hb_000732_120 Hb_000732_120 Hb_031527_020--Hb_000732_120 Hb_000336_250 Hb_000336_250 Hb_031527_020--Hb_000336_250 Hb_005489_080--Hb_000732_120 Hb_004128_050 Hb_004128_050 Hb_005489_080--Hb_004128_050 Hb_005489_080--Hb_003785_040 Hb_005489_080--Hb_111198_010 Hb_002025_110 Hb_002025_110 Hb_005489_080--Hb_002025_110 Hb_000261_220 Hb_000261_220 Hb_000457_050--Hb_000261_220 Hb_003299_030 Hb_003299_030 Hb_000457_050--Hb_003299_030 Hb_000283_130 Hb_000283_130 Hb_000457_050--Hb_000283_130 Hb_009771_100 Hb_009771_100 Hb_000457_050--Hb_009771_100 Hb_000152_340 Hb_000152_340 Hb_000457_050--Hb_000152_340 Hb_000224_060 Hb_000224_060 Hb_000140_080--Hb_000224_060 Hb_000140_080--Hb_033095_020 Hb_011386_040 Hb_011386_040 Hb_000140_080--Hb_011386_040 Hb_000140_080--Hb_000261_220 Hb_000140_080--Hb_031527_020 Hb_000140_080--Hb_000152_340 Hb_000394_190 Hb_000394_190 Hb_033095_020--Hb_000394_190 Hb_001168_040 Hb_001168_040 Hb_033095_020--Hb_001168_040 Hb_033095_020--Hb_002025_110 Hb_012799_110 Hb_012799_110 Hb_033095_020--Hb_012799_110 Hb_000959_270--Hb_000732_120 Hb_033153_070 Hb_033153_070 Hb_000959_270--Hb_033153_070 Hb_006960_050 Hb_006960_050 Hb_000959_270--Hb_006960_050 Hb_000785_030 Hb_000785_030 Hb_000959_270--Hb_000785_030 Hb_004631_180 Hb_004631_180 Hb_000959_270--Hb_004631_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
101.997 99.4629 50.2446 60.1954 96.5698 98.4133
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.8347 66.4429 44.6947 38.0475 21.9084

CAGE analysis