Hb_000861_070

Information

Type -
Description -
Location Contig861: 41172-44909
Sequence    

Annotation

kegg
ID rcu:RCOM_0621650
description hypothetical protein
nr
ID XP_002525567.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FFJ8
description L10-interacting MYB domain-containing protein OS=Arabidopsis thaliana GN=LIMYB PE=1 SV=1
trembl
ID B9SHU8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0621650 PE=4 SV=1
Gene Ontology
ID GO:0010286
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60820: 41202-44711
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000861_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004724_320 0.0500093152 - - Vesicle-associated membrane protein, putative [Ricinus communis]
3 Hb_002890_030 0.0752397499 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
4 Hb_075481_030 0.0768961168 - - PREDICTED: DNA-binding protein RHL1 isoform X3 [Jatropha curcas]
5 Hb_000521_260 0.0834914054 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
6 Hb_000008_330 0.0859688954 - - 60S ribosomal protein L12A [Hevea brasiliensis]
7 Hb_004162_280 0.0864601378 - - PREDICTED: uncharacterized protein LOC105628004 isoform X1 [Jatropha curcas]
8 Hb_001541_260 0.0876514293 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
9 Hb_165350_010 0.0926649782 - - unnamed protein product [Triticum aestivum]
10 Hb_002499_070 0.0927024215 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
11 Hb_012654_010 0.0965871037 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
12 Hb_000465_470 0.0966002387 - - unknown [Picea sitchensis]
13 Hb_004204_080 0.0968643119 - - diacylglycerol kinase, theta, putative [Ricinus communis]
14 Hb_000236_100 0.0970086701 - - Dynein alpha chain, flagellar outer arm [Gossypium arboreum]
15 Hb_003097_190 0.0971006455 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
16 Hb_000270_780 0.0972416927 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 [Jatropha curcas]
17 Hb_011612_010 0.0988709855 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
18 Hb_000140_080 0.0990172232 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
19 Hb_012193_010 0.0996558539 - - nucleic acid binding protein, putative [Ricinus communis]
20 Hb_000139_250 0.100112373 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]

Gene co-expression network

sample Hb_000861_070 Hb_000861_070 Hb_004724_320 Hb_004724_320 Hb_000861_070--Hb_004724_320 Hb_002890_030 Hb_002890_030 Hb_000861_070--Hb_002890_030 Hb_075481_030 Hb_075481_030 Hb_000861_070--Hb_075481_030 Hb_000521_260 Hb_000521_260 Hb_000861_070--Hb_000521_260 Hb_000008_330 Hb_000008_330 Hb_000861_070--Hb_000008_330 Hb_004162_280 Hb_004162_280 Hb_000861_070--Hb_004162_280 Hb_004724_320--Hb_075481_030 Hb_012762_020 Hb_012762_020 Hb_004724_320--Hb_012762_020 Hb_004724_320--Hb_000008_330 Hb_004724_320--Hb_000521_260 Hb_005505_050 Hb_005505_050 Hb_004724_320--Hb_005505_050 Hb_012654_010 Hb_012654_010 Hb_002890_030--Hb_012654_010 Hb_004204_080 Hb_004204_080 Hb_002890_030--Hb_004204_080 Hb_003097_190 Hb_003097_190 Hb_002890_030--Hb_003097_190 Hb_001057_010 Hb_001057_010 Hb_002890_030--Hb_001057_010 Hb_008643_060 Hb_008643_060 Hb_002890_030--Hb_008643_060 Hb_075481_030--Hb_000521_260 Hb_075481_030--Hb_004162_280 Hb_005276_210 Hb_005276_210 Hb_075481_030--Hb_005276_210 Hb_000173_510 Hb_000173_510 Hb_075481_030--Hb_000173_510 Hb_000768_110 Hb_000768_110 Hb_000521_260--Hb_000768_110 Hb_006586_050 Hb_006586_050 Hb_000521_260--Hb_006586_050 Hb_000510_310 Hb_000510_310 Hb_000521_260--Hb_000510_310 Hb_008511_030 Hb_008511_030 Hb_000521_260--Hb_008511_030 Hb_000976_320 Hb_000976_320 Hb_000521_260--Hb_000976_320 Hb_142439_010 Hb_142439_010 Hb_000008_330--Hb_142439_010 Hb_001047_100 Hb_001047_100 Hb_000008_330--Hb_001047_100 Hb_000008_330--Hb_075481_030 Hb_105386_010 Hb_105386_010 Hb_000008_330--Hb_105386_010 Hb_144787_030 Hb_144787_030 Hb_004162_280--Hb_144787_030 Hb_175338_020 Hb_175338_020 Hb_004162_280--Hb_175338_020 Hb_001541_020 Hb_001541_020 Hb_004162_280--Hb_001541_020 Hb_000236_100 Hb_000236_100 Hb_004162_280--Hb_000236_100 Hb_004162_280--Hb_000510_310 Hb_000139_250 Hb_000139_250 Hb_004162_280--Hb_000139_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.2189 28.9541 13.9834 15.4149 54.6862 39.2658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.0409 26.6898 24.8071 13.2327 5.69773

CAGE analysis