Hb_008643_060

Information

Type -
Description -
Location Contig8643: 64162-67530
Sequence    

Annotation

kegg
ID csv:101214358
description pentatricopeptide repeat-containing protein At1g19720-like
nr
ID CDP07465.1
description unnamed protein product [Coffea canephora]
swissprot
ID -
description -
trembl
ID A0A068UFX0
description Coffea canephora DH200=94 genomic scaffold, scaffold_26 OS=Coffea canephora GN=GSCOC_T00024736001 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60889: 50132-79383
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008643_060 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_004204_080 0.0850321951 - - diacylglycerol kinase, theta, putative [Ricinus communis]
3 Hb_002601_120 0.0864423147 - - PREDICTED: uncharacterized protein LOC105634921 [Jatropha curcas]
4 Hb_000270_780 0.0940724951 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 [Jatropha curcas]
5 Hb_001575_080 0.0993995122 - - PREDICTED: villin-4-like [Jatropha curcas]
6 Hb_002890_030 0.1000298961 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
7 Hb_000861_070 0.1038497667 - - conserved hypothetical protein [Ricinus communis]
8 Hb_165350_010 0.1088213128 - - unnamed protein product [Triticum aestivum]
9 Hb_001752_030 0.1106445621 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
10 Hb_000592_080 0.1118635593 - - PREDICTED: thymidylate kinase [Jatropha curcas]
11 Hb_002341_030 0.1153616619 - - PREDICTED: transcription factor bHLH140 [Jatropha curcas]
12 Hb_004678_020 0.1159231808 - - PREDICTED: protein YIF1B [Jatropha curcas]
13 Hb_080147_030 0.1165237919 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X3 [Jatropha curcas]
14 Hb_002928_060 0.1177368031 - - PREDICTED: pre-rRNA-processing protein TSR1 homolog [Jatropha curcas]
15 Hb_000532_020 0.1179140609 - - beta-tubulin [Bouteloua eriopoda]
16 Hb_140171_010 0.1199908881 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
17 Hb_000352_090 0.1213039864 - - PREDICTED: syntaxin-22-like isoform X1 [Jatropha curcas]
18 Hb_002200_130 0.1222805264 - - PREDICTED: vacuolar protein sorting-associated protein 45 homolog [Jatropha curcas]
19 Hb_010222_080 0.122547162 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
20 Hb_011612_010 0.1228995476 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]

Gene co-expression network

sample Hb_008643_060 Hb_008643_060 Hb_004204_080 Hb_004204_080 Hb_008643_060--Hb_004204_080 Hb_002601_120 Hb_002601_120 Hb_008643_060--Hb_002601_120 Hb_000270_780 Hb_000270_780 Hb_008643_060--Hb_000270_780 Hb_001575_080 Hb_001575_080 Hb_008643_060--Hb_001575_080 Hb_002890_030 Hb_002890_030 Hb_008643_060--Hb_002890_030 Hb_000861_070 Hb_000861_070 Hb_008643_060--Hb_000861_070 Hb_001797_050 Hb_001797_050 Hb_004204_080--Hb_001797_050 Hb_005730_030 Hb_005730_030 Hb_004204_080--Hb_005730_030 Hb_005532_050 Hb_005532_050 Hb_004204_080--Hb_005532_050 Hb_000031_050 Hb_000031_050 Hb_004204_080--Hb_000031_050 Hb_022408_010 Hb_022408_010 Hb_004204_080--Hb_022408_010 Hb_001541_020 Hb_001541_020 Hb_004204_080--Hb_001541_020 Hb_002601_120--Hb_004204_080 Hb_001019_170 Hb_001019_170 Hb_002601_120--Hb_001019_170 Hb_008714_020 Hb_008714_020 Hb_002601_120--Hb_008714_020 Hb_002200_130 Hb_002200_130 Hb_002601_120--Hb_002200_130 Hb_000046_450 Hb_000046_450 Hb_002601_120--Hb_000046_450 Hb_165350_010 Hb_165350_010 Hb_000270_780--Hb_165350_010 Hb_156850_030 Hb_156850_030 Hb_000270_780--Hb_156850_030 Hb_001728_100 Hb_001728_100 Hb_000270_780--Hb_001728_100 Hb_000270_780--Hb_004204_080 Hb_001057_010 Hb_001057_010 Hb_000270_780--Hb_001057_010 Hb_003018_160 Hb_003018_160 Hb_001575_080--Hb_003018_160 Hb_011497_010 Hb_011497_010 Hb_001575_080--Hb_011497_010 Hb_000116_280 Hb_000116_280 Hb_001575_080--Hb_000116_280 Hb_175338_020 Hb_175338_020 Hb_001575_080--Hb_175338_020 Hb_003847_120 Hb_003847_120 Hb_001575_080--Hb_003847_120 Hb_000906_060 Hb_000906_060 Hb_001575_080--Hb_000906_060 Hb_002890_030--Hb_000861_070 Hb_012654_010 Hb_012654_010 Hb_002890_030--Hb_012654_010 Hb_002890_030--Hb_004204_080 Hb_003097_190 Hb_003097_190 Hb_002890_030--Hb_003097_190 Hb_002890_030--Hb_001057_010 Hb_004724_320 Hb_004724_320 Hb_000861_070--Hb_004724_320 Hb_075481_030 Hb_075481_030 Hb_000861_070--Hb_075481_030 Hb_000521_260 Hb_000521_260 Hb_000861_070--Hb_000521_260 Hb_000008_330 Hb_000008_330 Hb_000861_070--Hb_000008_330 Hb_004162_280 Hb_004162_280 Hb_000861_070--Hb_004162_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.9235 19.3405 9.45935 12.4773 37.9086 37.0074
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.1781 10.7088 23.0011 6.07609 3.77485

CAGE analysis