Hb_005532_050

Information

Type -
Description -
Location Contig5532: 20340-23377
Sequence    

Annotation

kegg
ID pop:POPTR_0008s09300g
description POPTRDRAFT_1084806; leucine-rich repeat family protein
nr
ID XP_012067749.1
description PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
swissprot
ID Q9LP24
description Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1
trembl
ID A0A067KYR1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15684 PE=4 SV=1
Gene Ontology
ID GO:0016301
description probable leucine-rich repeat receptor-like protein kinase at1g35710

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48336: 20438-23292 , PASA_asmbl_48337: 22965-23087
cDNA
(Sanger)
(ID:Location)		 015_L12.ab1: 20438-21798

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005532_050 0.0 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
2 Hb_003464_050 0.0474767042 - - hypothetical protein POPTR_0006s11880g [Populus trichocarpa]
3 Hb_001680_010 0.0554861723 - - Serine/threonine protein kinase SAPK3 [Medicago truncatula]
4 Hb_001301_200 0.0606125002 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
5 Hb_001797_050 0.0628782814 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
6 Hb_008803_090 0.0683524585 - - PREDICTED: COP9 signalosome complex subunit 6a [Jatropha curcas]
7 Hb_001541_020 0.0697059468 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
8 Hb_000879_200 0.0707642199 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
9 Hb_000538_100 0.0712230217 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005993_020 0.0717912756 - - PREDICTED: uncharacterized protein LOC105649970 [Jatropha curcas]
11 Hb_001677_210 0.071969798 - - hypothetical protein JCGZ_01374 [Jatropha curcas]
12 Hb_001595_030 0.072148443 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
13 Hb_004204_080 0.0726835681 - - diacylglycerol kinase, theta, putative [Ricinus communis]
14 Hb_008864_110 0.072953906 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
15 Hb_000107_500 0.0730283279 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
16 Hb_000002_040 0.0733131723 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
17 Hb_003609_030 0.0733629666 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
18 Hb_006252_040 0.0734123508 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
19 Hb_004447_060 0.0741912065 - - PREDICTED: uncharacterized protein LOC105636329 isoform X2 [Jatropha curcas]
20 Hb_000322_100 0.0745849255 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]

Gene co-expression network

sample Hb_005532_050 Hb_005532_050 Hb_003464_050 Hb_003464_050 Hb_005532_050--Hb_003464_050 Hb_001680_010 Hb_001680_010 Hb_005532_050--Hb_001680_010 Hb_001301_200 Hb_001301_200 Hb_005532_050--Hb_001301_200 Hb_001797_050 Hb_001797_050 Hb_005532_050--Hb_001797_050 Hb_008803_090 Hb_008803_090 Hb_005532_050--Hb_008803_090 Hb_001541_020 Hb_001541_020 Hb_005532_050--Hb_001541_020 Hb_001926_030 Hb_001926_030 Hb_003464_050--Hb_001926_030 Hb_001595_030 Hb_001595_030 Hb_003464_050--Hb_001595_030 Hb_143629_210 Hb_143629_210 Hb_003464_050--Hb_143629_210 Hb_003464_050--Hb_008803_090 Hb_000152_380 Hb_000152_380 Hb_003464_050--Hb_000152_380 Hb_005993_020 Hb_005993_020 Hb_001680_010--Hb_005993_020 Hb_002131_020 Hb_002131_020 Hb_001680_010--Hb_002131_020 Hb_001680_010--Hb_001301_200 Hb_002835_370 Hb_002835_370 Hb_001680_010--Hb_002835_370 Hb_001680_010--Hb_001541_020 Hb_007163_090 Hb_007163_090 Hb_001301_200--Hb_007163_090 Hb_023344_030 Hb_023344_030 Hb_001301_200--Hb_023344_030 Hb_004724_200 Hb_004724_200 Hb_001301_200--Hb_004724_200 Hb_004447_060 Hb_004447_060 Hb_001301_200--Hb_004447_060 Hb_048937_040 Hb_048937_040 Hb_001301_200--Hb_048937_040 Hb_004724_060 Hb_004724_060 Hb_001797_050--Hb_004724_060 Hb_000207_390 Hb_000207_390 Hb_001797_050--Hb_000207_390 Hb_001797_050--Hb_007163_090 Hb_009411_010 Hb_009411_010 Hb_001797_050--Hb_009411_010 Hb_004204_080 Hb_004204_080 Hb_001797_050--Hb_004204_080 Hb_000803_190 Hb_000803_190 Hb_001797_050--Hb_000803_190 Hb_106552_050 Hb_106552_050 Hb_008803_090--Hb_106552_050 Hb_008803_090--Hb_001926_030 Hb_001635_170 Hb_001635_170 Hb_008803_090--Hb_001635_170 Hb_008803_090--Hb_001595_030 Hb_001677_210 Hb_001677_210 Hb_008803_090--Hb_001677_210 Hb_022408_010 Hb_022408_010 Hb_001541_020--Hb_022408_010 Hb_000107_500 Hb_000107_500 Hb_001541_020--Hb_000107_500 Hb_002221_050 Hb_002221_050 Hb_001541_020--Hb_002221_050 Hb_000244_250 Hb_000244_250 Hb_001541_020--Hb_000244_250 Hb_004162_280 Hb_004162_280 Hb_001541_020--Hb_004162_280 Hb_002301_220 Hb_002301_220 Hb_001541_020--Hb_002301_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
64.4607 48.4816 30.7705 29.1038 65.1978 81.8881
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.6392 38.0543 52.5518 29.1367 22.781

CAGE analysis