Hb_143629_210

Information

Type -
Description -
Location Contig143629: 144037-148859
Sequence    

Annotation

kegg
ID rcu:RCOM_1436840
description hypothetical protein
nr
ID XP_012088810.1
description PREDICTED: transcription factor PIF3 isoform X1 [Jatropha curcas]
swissprot
ID O80536
description Transcription factor PIF3 OS=Arabidopsis thaliana GN=PIF3 PE=1 SV=1
trembl
ID A0A067JHJ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23160 PE=4 SV=1
Gene Ontology
ID GO:0046983
description phytochrome-interacting factor 3 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11506: 144037-148686 , PASA_asmbl_11508: 144037-148686 , PASA_asmbl_11509: 147345-148870
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143629_210 0.0 - - PREDICTED: transcription factor PIF3 isoform X1 [Jatropha curcas]
2 Hb_000808_270 0.0560004129 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
3 Hb_003464_050 0.0676060936 - - hypothetical protein POPTR_0006s11880g [Populus trichocarpa]
4 Hb_004032_150 0.0692427007 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
5 Hb_000618_040 0.0701464534 - - hypothetical protein CICLE_v10027942mg [Citrus clementina]
6 Hb_000010_330 0.07080827 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
7 Hb_000451_010 0.0708230033 - - secretory carrier membrane protein, putative [Ricinus communis]
8 Hb_001301_200 0.0713343307 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
9 Hb_003175_010 0.0715827666 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
10 Hb_007904_200 0.0720329155 - - protein binding protein, putative [Ricinus communis]
11 Hb_023344_030 0.0722608094 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
12 Hb_006827_020 0.0729532518 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000152_380 0.0741962584 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
14 Hb_010457_030 0.0742904727 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
15 Hb_001226_030 0.0752741929 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 [Jatropha curcas]
16 Hb_007317_110 0.0757754987 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
17 Hb_010618_010 0.0758574095 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
18 Hb_011671_240 0.0761365782 - - PREDICTED: WD repeat-containing protein WRAP73-like [Jatropha curcas]
19 Hb_001143_160 0.0762193255 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X2 [Jatropha curcas]
20 Hb_007059_010 0.076294511 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]

Gene co-expression network

sample Hb_143629_210 Hb_143629_210 Hb_000808_270 Hb_000808_270 Hb_143629_210--Hb_000808_270 Hb_003464_050 Hb_003464_050 Hb_143629_210--Hb_003464_050 Hb_004032_150 Hb_004032_150 Hb_143629_210--Hb_004032_150 Hb_000618_040 Hb_000618_040 Hb_143629_210--Hb_000618_040 Hb_000010_330 Hb_000010_330 Hb_143629_210--Hb_000010_330 Hb_000451_010 Hb_000451_010 Hb_143629_210--Hb_000451_010 Hb_006827_020 Hb_006827_020 Hb_000808_270--Hb_006827_020 Hb_003175_010 Hb_003175_010 Hb_000808_270--Hb_003175_010 Hb_001677_210 Hb_001677_210 Hb_000808_270--Hb_001677_210 Hb_007317_110 Hb_007317_110 Hb_000808_270--Hb_007317_110 Hb_000629_010 Hb_000629_010 Hb_000808_270--Hb_000629_010 Hb_005532_050 Hb_005532_050 Hb_003464_050--Hb_005532_050 Hb_001926_030 Hb_001926_030 Hb_003464_050--Hb_001926_030 Hb_001595_030 Hb_001595_030 Hb_003464_050--Hb_001595_030 Hb_008803_090 Hb_008803_090 Hb_003464_050--Hb_008803_090 Hb_000152_380 Hb_000152_380 Hb_003464_050--Hb_000152_380 Hb_004767_100 Hb_004767_100 Hb_004032_150--Hb_004767_100 Hb_007416_280 Hb_007416_280 Hb_004032_150--Hb_007416_280 Hb_001638_170 Hb_001638_170 Hb_004032_150--Hb_001638_170 Hb_000318_290 Hb_000318_290 Hb_004032_150--Hb_000318_290 Hb_148644_010 Hb_148644_010 Hb_004032_150--Hb_148644_010 Hb_001489_150 Hb_001489_150 Hb_004032_150--Hb_001489_150 Hb_000618_040--Hb_000451_010 Hb_005357_080 Hb_005357_080 Hb_000618_040--Hb_005357_080 Hb_008511_130 Hb_008511_130 Hb_000618_040--Hb_008511_130 Hb_000618_040--Hb_007416_280 Hb_000019_030 Hb_000019_030 Hb_000618_040--Hb_000019_030 Hb_000230_560 Hb_000230_560 Hb_000618_040--Hb_000230_560 Hb_007904_200 Hb_007904_200 Hb_000010_330--Hb_007904_200 Hb_010457_030 Hb_010457_030 Hb_000010_330--Hb_010457_030 Hb_019280_040 Hb_019280_040 Hb_000010_330--Hb_019280_040 Hb_003665_060 Hb_003665_060 Hb_000010_330--Hb_003665_060 Hb_002200_080 Hb_002200_080 Hb_000010_330--Hb_002200_080 Hb_048937_040 Hb_048937_040 Hb_000010_330--Hb_048937_040 Hb_011671_240 Hb_011671_240 Hb_000451_010--Hb_011671_240 Hb_004907_080 Hb_004907_080 Hb_000451_010--Hb_004907_080 Hb_000451_010--Hb_007904_200 Hb_000451_010--Hb_000010_330 Hb_032208_090 Hb_032208_090 Hb_000451_010--Hb_032208_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.7964 14.8287 12.7771 14.7869 21.0983 27.375
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.8703 15.1877 23.5458 12.4664 7.94471

CAGE analysis