Hb_004767_100

Information

Type -
Description -
Location Contig4767: 85059-118159
Sequence    

Annotation

kegg
ID rcu:RCOM_0476750
description eukaryotic translation initiation factor 2c, putative
nr
ID XP_002523757.1
description eukaryotic translation initiation factor 2c, putative [Ricinus communis]
swissprot
ID Q9SJK3
description Protein argonaute 5 OS=Arabidopsis thaliana GN=AGO5 PE=1 SV=2
trembl
ID B9SCN8
description Protein argonaute OS=Ricinus communis GN=RCOM_0476750 PE=3 SV=1
Gene Ontology
ID GO:0003743
description argonaute family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44512: 106634-113886
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004767_100 0.0 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
2 Hb_004032_150 0.0487791331 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
3 Hb_000608_240 0.06472779 - - eIF4-gamma/eIF5/eIF2-epsilon domain-containing family protein [Populus trichocarpa]
4 Hb_000318_290 0.0671766876 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
5 Hb_005170_040 0.0684505304 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
6 Hb_148644_010 0.0718295823 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
7 Hb_000205_300 0.0728226126 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
8 Hb_023344_030 0.0764933057 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
9 Hb_003777_310 0.0777027388 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006332_010 0.0785645581 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 isoform X1 [Vitis vinifera]
11 Hb_001638_170 0.0816903019 - - hypothetical protein Csa_3G118170 [Cucumis sativus]
12 Hb_000953_020 0.083749138 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
13 Hb_011485_070 0.084756623 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
14 Hb_007416_280 0.0851134292 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005333_070 0.0863518015 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000125_130 0.0871245006 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC104879785 [Vitis vinifera]
17 Hb_000365_390 0.0872501717 - - PREDICTED: KH domain-containing protein At2g38610 [Jatropha curcas]
18 Hb_000120_670 0.0875800445 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
19 Hb_000009_240 0.0879149774 - - PREDICTED: E3 ubiquitin-protein ligase RNF185-like isoform X1 [Jatropha curcas]
20 Hb_007163_090 0.0881788127 - - PREDICTED: protein spt2-like [Jatropha curcas]

Gene co-expression network

sample Hb_004767_100 Hb_004767_100 Hb_004032_150 Hb_004032_150 Hb_004767_100--Hb_004032_150 Hb_000608_240 Hb_000608_240 Hb_004767_100--Hb_000608_240 Hb_000318_290 Hb_000318_290 Hb_004767_100--Hb_000318_290 Hb_005170_040 Hb_005170_040 Hb_004767_100--Hb_005170_040 Hb_148644_010 Hb_148644_010 Hb_004767_100--Hb_148644_010 Hb_000205_300 Hb_000205_300 Hb_004767_100--Hb_000205_300 Hb_007416_280 Hb_007416_280 Hb_004032_150--Hb_007416_280 Hb_001638_170 Hb_001638_170 Hb_004032_150--Hb_001638_170 Hb_004032_150--Hb_000318_290 Hb_004032_150--Hb_148644_010 Hb_001489_150 Hb_001489_150 Hb_004032_150--Hb_001489_150 Hb_006332_010 Hb_006332_010 Hb_000608_240--Hb_006332_010 Hb_000608_240--Hb_005170_040 Hb_000191_150 Hb_000191_150 Hb_000608_240--Hb_000191_150 Hb_000009_240 Hb_000009_240 Hb_000608_240--Hb_000009_240 Hb_000608_240--Hb_004032_150 Hb_003777_310 Hb_003777_310 Hb_000318_290--Hb_003777_310 Hb_054865_150 Hb_054865_150 Hb_000318_290--Hb_054865_150 Hb_000608_320 Hb_000608_320 Hb_000318_290--Hb_000608_320 Hb_000120_670 Hb_000120_670 Hb_000318_290--Hb_000120_670 Hb_005170_040--Hb_000608_320 Hb_005170_040--Hb_003777_310 Hb_005170_040--Hb_000318_290 Hb_007059_010 Hb_007059_010 Hb_005170_040--Hb_007059_010 Hb_023344_030 Hb_023344_030 Hb_005170_040--Hb_023344_030 Hb_002835_080 Hb_002835_080 Hb_148644_010--Hb_002835_080 Hb_000700_110 Hb_000700_110 Hb_148644_010--Hb_000700_110 Hb_002477_330 Hb_002477_330 Hb_148644_010--Hb_002477_330 Hb_000035_320 Hb_000035_320 Hb_148644_010--Hb_000035_320 Hb_003195_070 Hb_003195_070 Hb_148644_010--Hb_003195_070 Hb_000603_150 Hb_000603_150 Hb_000205_300--Hb_000603_150 Hb_004310_020 Hb_004310_020 Hb_000205_300--Hb_004310_020 Hb_158062_010 Hb_158062_010 Hb_000205_300--Hb_158062_010 Hb_000205_300--Hb_000120_670 Hb_003693_070 Hb_003693_070 Hb_000205_300--Hb_003693_070 Hb_010712_030 Hb_010712_030 Hb_000205_300--Hb_010712_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.462609 0.450542 0.21844 0.600982 0.511275 0.972244
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.561816 0.602438 0.639558 0.511507 0.226064

CAGE analysis