Hb_023344_030

Information

Type -
Description -
Location Contig23344: 63123-69833
Sequence    

Annotation

kegg
ID rcu:RCOM_0542300
description Ras-GTPase-activating protein-binding protein, putative
nr
ID XP_012085229.1
description PREDICTED: putative G3BP-like protein [Jatropha curcas]
swissprot
ID O94260
description Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nxt3 PE=1 SV=1
trembl
ID A0A067JRF3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17625 PE=4 SV=1
Gene Ontology
ID GO:0005622
description g3bp-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24513: 63138-69765
cDNA
(Sanger)
(ID:Location)		 041_H05.ab1: 63138-63706

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023344_030 0.0 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
2 Hb_001301_200 0.0546162708 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
3 Hb_007163_090 0.0675903005 - - PREDICTED: protein spt2-like [Jatropha curcas]
4 Hb_007059_010 0.0689847044 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
5 Hb_004032_150 0.0703847689 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
6 Hb_000051_070 0.0714915452 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
7 Hb_005170_040 0.0722246712 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
8 Hb_143629_210 0.0722608094 - - PREDICTED: transcription factor PIF3 isoform X1 [Jatropha curcas]
9 Hb_000207_390 0.0727348503 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
10 Hb_000103_180 0.0748031866 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
11 Hb_002811_360 0.075188695 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
12 Hb_006827_020 0.0752884106 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000085_160 0.0764391742 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
14 Hb_004767_100 0.0764933057 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
15 Hb_000808_270 0.0767271221 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
16 Hb_004724_200 0.0767389047 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
17 Hb_002200_130 0.0774746345 - - PREDICTED: vacuolar protein sorting-associated protein 45 homolog [Jatropha curcas]
18 Hb_000802_080 0.0777349962 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
19 Hb_003195_070 0.0781358412 - - Uncharacterized protein isoform 1 [Theobroma cacao]
20 Hb_006332_010 0.078856465 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 isoform X1 [Vitis vinifera]

Gene co-expression network

sample Hb_023344_030 Hb_023344_030 Hb_001301_200 Hb_001301_200 Hb_023344_030--Hb_001301_200 Hb_007163_090 Hb_007163_090 Hb_023344_030--Hb_007163_090 Hb_007059_010 Hb_007059_010 Hb_023344_030--Hb_007059_010 Hb_004032_150 Hb_004032_150 Hb_023344_030--Hb_004032_150 Hb_000051_070 Hb_000051_070 Hb_023344_030--Hb_000051_070 Hb_005170_040 Hb_005170_040 Hb_023344_030--Hb_005170_040 Hb_001301_200--Hb_007163_090 Hb_004724_200 Hb_004724_200 Hb_001301_200--Hb_004724_200 Hb_004447_060 Hb_004447_060 Hb_001301_200--Hb_004447_060 Hb_001680_010 Hb_001680_010 Hb_001301_200--Hb_001680_010 Hb_048937_040 Hb_048937_040 Hb_001301_200--Hb_048937_040 Hb_001226_030 Hb_001226_030 Hb_007163_090--Hb_001226_030 Hb_000207_390 Hb_000207_390 Hb_007163_090--Hb_000207_390 Hb_000577_010 Hb_000577_010 Hb_007163_090--Hb_000577_010 Hb_123352_020 Hb_123352_020 Hb_007163_090--Hb_123352_020 Hb_001797_050 Hb_001797_050 Hb_007163_090--Hb_001797_050 Hb_006827_020 Hb_006827_020 Hb_007059_010--Hb_006827_020 Hb_007317_110 Hb_007317_110 Hb_007059_010--Hb_007317_110 Hb_002783_240 Hb_002783_240 Hb_007059_010--Hb_002783_240 Hb_000538_100 Hb_000538_100 Hb_007059_010--Hb_000538_100 Hb_103012_010 Hb_103012_010 Hb_007059_010--Hb_103012_010 Hb_009775_020 Hb_009775_020 Hb_007059_010--Hb_009775_020 Hb_004767_100 Hb_004767_100 Hb_004032_150--Hb_004767_100 Hb_007416_280 Hb_007416_280 Hb_004032_150--Hb_007416_280 Hb_001638_170 Hb_001638_170 Hb_004032_150--Hb_001638_170 Hb_000318_290 Hb_000318_290 Hb_004032_150--Hb_000318_290 Hb_148644_010 Hb_148644_010 Hb_004032_150--Hb_148644_010 Hb_001489_150 Hb_001489_150 Hb_004032_150--Hb_001489_150 Hb_001006_140 Hb_001006_140 Hb_000051_070--Hb_001006_140 Hb_000152_380 Hb_000152_380 Hb_000051_070--Hb_000152_380 Hb_000815_210 Hb_000815_210 Hb_000051_070--Hb_000815_210 Hb_005276_210 Hb_005276_210 Hb_000051_070--Hb_005276_210 Hb_001369_420 Hb_001369_420 Hb_000051_070--Hb_001369_420 Hb_003952_070 Hb_003952_070 Hb_000051_070--Hb_003952_070 Hb_000608_320 Hb_000608_320 Hb_005170_040--Hb_000608_320 Hb_003777_310 Hb_003777_310 Hb_005170_040--Hb_003777_310 Hb_005170_040--Hb_004767_100 Hb_005170_040--Hb_000318_290 Hb_005170_040--Hb_007059_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.9539 30.6287 15.9687 34.2732 57.9114 67.9211
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.9446 40.4908 49.5077 31.3769 17.9841

CAGE analysis