Hb_004447_060

Information

Type -
Description -
Location Contig4447: 58472-67444
Sequence    

Annotation

kegg
ID rcu:RCOM_0451740
description hypothetical protein
nr
ID XP_012074979.1
description PREDICTED: uncharacterized protein LOC105636329 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KHG1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09104 PE=4 SV=1
Gene Ontology
ID GO:0005515
description tetratricopeptide repeat -like superfamily isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42788: 58812-66021 , PASA_asmbl_42789: 59263-59658 , PASA_asmbl_42790: 60104-60610 , PASA_asmbl_42791: 66038-66557 , PASA_asmbl_42792: 67064-67591
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004447_060 0.0 - - PREDICTED: uncharacterized protein LOC105636329 isoform X2 [Jatropha curcas]
2 Hb_001301_200 0.0569968612 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
3 Hb_001797_050 0.0657214796 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
4 Hb_004619_050 0.0659821831 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X2 [Jatropha curcas]
5 Hb_048937_040 0.0669279981 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
6 Hb_007163_090 0.0670937642 - - PREDICTED: protein spt2-like [Jatropha curcas]
7 Hb_000820_170 0.0676986594 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
8 Hb_006332_010 0.0698825747 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 isoform X1 [Vitis vinifera]
9 Hb_005532_050 0.0741912065 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
10 Hb_005883_050 0.0759760619 - - PREDICTED: transportin-3 [Jatropha curcas]
11 Hb_001047_030 0.079396987 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
12 Hb_004096_030 0.0801140571 - - PREDICTED: KH domain-containing protein At4g18375-like isoform X1 [Jatropha curcas]
13 Hb_000101_240 0.0803043856 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
14 Hb_020000_020 0.0808063767 - - Troponin C, skeletal muscle, putative [Ricinus communis]
15 Hb_001866_110 0.0813953535 - - PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
16 Hb_006252_040 0.0815916874 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
17 Hb_001019_230 0.0816705939 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070 [Jatropha curcas]
18 Hb_000207_390 0.0819777581 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
19 Hb_004724_200 0.0828586788 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
20 Hb_011139_030 0.0828661541 - - PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Jatropha curcas]

Gene co-expression network

sample Hb_004447_060 Hb_004447_060 Hb_001301_200 Hb_001301_200 Hb_004447_060--Hb_001301_200 Hb_001797_050 Hb_001797_050 Hb_004447_060--Hb_001797_050 Hb_004619_050 Hb_004619_050 Hb_004447_060--Hb_004619_050 Hb_048937_040 Hb_048937_040 Hb_004447_060--Hb_048937_040 Hb_007163_090 Hb_007163_090 Hb_004447_060--Hb_007163_090 Hb_000820_170 Hb_000820_170 Hb_004447_060--Hb_000820_170 Hb_001301_200--Hb_007163_090 Hb_023344_030 Hb_023344_030 Hb_001301_200--Hb_023344_030 Hb_004724_200 Hb_004724_200 Hb_001301_200--Hb_004724_200 Hb_001680_010 Hb_001680_010 Hb_001301_200--Hb_001680_010 Hb_001301_200--Hb_048937_040 Hb_004724_060 Hb_004724_060 Hb_001797_050--Hb_004724_060 Hb_000207_390 Hb_000207_390 Hb_001797_050--Hb_000207_390 Hb_001797_050--Hb_007163_090 Hb_009411_010 Hb_009411_010 Hb_001797_050--Hb_009411_010 Hb_004204_080 Hb_004204_080 Hb_001797_050--Hb_004204_080 Hb_000803_190 Hb_000803_190 Hb_001797_050--Hb_000803_190 Hb_032458_010 Hb_032458_010 Hb_004619_050--Hb_032458_010 Hb_002027_270 Hb_002027_270 Hb_004619_050--Hb_002027_270 Hb_025012_010 Hb_025012_010 Hb_004619_050--Hb_025012_010 Hb_003428_070 Hb_003428_070 Hb_004619_050--Hb_003428_070 Hb_000429_120 Hb_000429_120 Hb_004619_050--Hb_000429_120 Hb_010457_030 Hb_010457_030 Hb_048937_040--Hb_010457_030 Hb_003175_010 Hb_003175_010 Hb_048937_040--Hb_003175_010 Hb_048937_040--Hb_004724_200 Hb_000010_330 Hb_000010_330 Hb_048937_040--Hb_000010_330 Hb_010139_040 Hb_010139_040 Hb_048937_040--Hb_010139_040 Hb_001226_030 Hb_001226_030 Hb_007163_090--Hb_001226_030 Hb_007163_090--Hb_000207_390 Hb_000577_010 Hb_000577_010 Hb_007163_090--Hb_000577_010 Hb_123352_020 Hb_123352_020 Hb_007163_090--Hb_123352_020 Hb_006252_040 Hb_006252_040 Hb_000820_170--Hb_006252_040 Hb_000820_170--Hb_003428_070 Hb_016898_010 Hb_016898_010 Hb_000820_170--Hb_016898_010 Hb_005731_030 Hb_005731_030 Hb_000820_170--Hb_005731_030 Hb_000101_240 Hb_000101_240 Hb_000820_170--Hb_000101_240 Hb_000820_170--Hb_123352_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.5213 9.47787 4.90698 7.28307 13.6824 24.8035
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.87217 10.856 12.9648 7.0333 6.60674

CAGE analysis